Cyanidioschyzon merolae: CYME_CMO206C
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Entry
CYME_CMO206C CDS
T00175
Name
(RefSeq) similar to ribosomal RNA processing exonuclease RRP41
KO
K12587
exosome complex component MTR3
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYME_CMO206C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CMO206C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CYME_CMO206C
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Paralog
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
16995685
NCBI-ProteinID:
XP_005537595
UniProt:
M1V9J4
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Position
15:complement(528470..529411)
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AA seq
313 aa
AA seq
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MKKMLVVVPTAAQVHSAPGLRRAFKDACQVRKYAMKSFRCQLGVLSRPEGSAVCQLGKTK
VVAAVFGPRPPQGSTDTDTELATVVVEYRQGLSSRPLSIQTLESDTISTGLQFAGGESDE
QRWAPSRGRATLSETERRFAAALTRSLECVIARTEYPRLQFWVYIWVLEEGGSELALATT
AAWAACLDAGVALVDALVGVSVAVNATPGYAGTEQTCIAFPTSEEEASAHEGRLWVALLP
NLGLTADLQWRGATSQRRRDDSTVDDIRAPESFSKAFCCAQQAAVAMYPILREQLVAQLG
EKKPSATSAWFTA
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaatgctcgtggttgtaccaaccgccgcccaagtacatagcgctccaggcctt
cgccgtgccttcaaggacgcgtgccaagtacgtaagtatgcgatgaagtcgttccgctgc
cagttgggcgttctttccaggcccgagggcagcgctgtttgccagttagggaagacaaaa
gtcgtggctgcggtattcggaccgcggccgccccaggggagcaccgacaccgacactgag
ctggcaaccgtggtcgtggagtaccgccaggggctctcaagccgcccgttatcaatacag
acgctagaatcagatacgatatccactggactccagtttgccggtggagaatcggacgag
cagcgctgggcaccctcgcgcggacgcgctacgctcagcgaaacggagcgaaggttcgca
gcggcgctaacgcgctccctcgagtgtgtcatcgctcgcactgaatacccacgactacag
ttctgggtatatatctgggttctggaggagggtggcagtgaacttgcgcttgcaacaacc
gcggcctgggccgcttgtctagatgccggggtcgcgctcgttgatgcacttgtcggcgtc
tctgtcgccgttaacgcgacaccggggtatgcaggcacagagcagacctgcatcgctttt
ccaacatcggaagaggaagccagcgcccacgaagggcgtctatgggttgctctgttgccg
aatctgggcctaactgcagatctgcagtggcgtggtgccacgagccaacgacgtcgggat
gacagcacagtcgacgatattcgtgctccggagagcttctcaaaggcattttgctgtgcg
caacaggctgcagttgctatgtatcccattctgcgcgagcaacttgtggcacagcttggc
gagaagaagccatcagcaacgagtgcttggttcacagcgtga
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