Cyanidioschyzon merolae: CYME_CMO312C
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Entry
CYME_CMO312C CDS
T00175
Name
(RefSeq) similar to pre-mRNA cleavage complex II protein Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CYME_CMO312C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CMO312C
Enzymes [BR:
cme01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
CYME_CMO312C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CYME_CMO312C
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
Motif
Other DBs
NCBI-GeneID:
16995802
NCBI-ProteinID:
XP_005537677
UniProt:
M1UUS4
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Position
15:complement(776188..777750)
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AA seq
520 aa
AA seq
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MADTLSSHSSGLGTGHNADAWRVFDLRAENELRLEVSDDTQSTAQLRLLRGTAEVLGREL
ALHQSFDLRPGSRLGVFTWHGCRVEVRGSFHVPPYIAEETPNPLVMNIHAVLQRQREQSF
RTGRDGRSNKTPRVAVVGPHDSGKLTVAATLAAYALRHLGARLAWLDLDPGAGFGPCSRL
TAVPGALVMMSLHRPLLALEDAAAFERPICWYFGHFYPHDNAKSYLTLIGAIRRQLDAWM
TEVDAKAAKAGDQGADTEAPLLYNAGCIAVLPAWTETRESFDLLADALHELSPTCVVVLE
SERLYALLRQSYDDRVNTDTKQRVDLVRIPKSGGVVPRDTSIRRAERAKRFRSYFYGLHG
ELHPHPLWLPTADILLYRICERALAPLTALPLGETFPDQESLEIEFLTELQEEMLHTVGA
VSQASEQELAARLPNVISGASAAPPAAEASSHIDAPSTVWERPHLDDPTIVTRMVGTPVF
GFVQITAVDRFRGRLRILSPSPGKLPSKLLQVSTDLRWIE
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggccgataccctaagttcgcacagttcaggcctgggtaccggacacaacgcagatgcc
tggcgagtttttgacttgagagccgagaacgagttacgacttgaggtttccgacgacaca
cagtcgaccgcacagctgcgcttattgcgtggcactgcggaagtcctcggacgggagctg
gcgcttcatcagagctttgatctgcggcctggaagtcgtttgggcgtcttcacgtggcat
ggatgtcgtgtcgaggttcgcggatcgttccatgtgccgccgtatattgcagaggaaaca
ccaaacccacttgtgatgaacattcatgcagtgctccagcggcaacgtgagcaaagcttt
cgcactggacgcgacggtcgctcgaataagacaccgcgggtggccgtcgtgggcccccat
gacagcggcaagctgacggtggcggcaactctggcagcctacgcactgcggcacctcggt
gctcgacttgcgtggctagacttggaccctggcgctggcttcgggccgtgcagccgacta
acggcggttcccggcgccctggtgatgatgtcgctgcatcggccgctgcttgcgctggaa
gatgcggcggcatttgaacggccaatctgttggtactttgggcatttctatccacatgat
aacgccaagtcctatttgacgctcattggagccatcagacgtcagctggacgcgtggatg
acggaagtagacgcaaaagcggcaaaagcgggtgatcagggagctgacaccgaggcacct
ctgctctacaacgccggttgcattgcagtactgcccgcatggacagagactcgcgagagt
ttcgatctgctcgccgatgcgcttcatgaactatcacccacttgtgtcgttgttcttgaa
tcggaacgtttgtatgcgctactccgtcaatcatatgacgatcgggtgaacaccgatacg
aaacaacgcgtggatctcgttcgaattcccaagagcggtggcgtcgtgcctcgggataca
tccatccgtcgagcagagcgtgcgaagcgctttcgatcctacttttatggtcttcacggg
gagcttcatccccacccgctatggcttccgaccgcagacatcctactctatcgaatctgt
gagcgagcgctcgcgcctctgacggcgttaccgctaggcgaaacgtttccggaccaagaa
tccctagaaatcgagttccttacagagcttcaagaggagatgctgcatacggtgggtgcg
gtgagtcaggcctcagagcaagagctggccgcgagattaccaaacgtgatatccggggcc
tccgcagcgcccccagcggccgaggcgtccagccatattgacgcgccgagcaccgtctgg
gagcggcctcacttggatgatccgaccatcgttactcgtatggtgggcactccggttttc
ggtttcgtacagataacggcggtggatcggtttcgaggtcgtctgcgaattctgtccccg
tcaccgggcaagctgccatcgaaactactccaagtctcgacggatctccgttggatcgag
tga
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