Cyanidioschyzon merolae: CYME_CMP065C
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Entry
CYME_CMP065C CDS
T00175
Name
(RefSeq) DNA excision repair protein ERCC2/XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03022
Basal transcription factors
cme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CYME_CMP065C
09124 Replication and repair
03420 Nucleotide excision repair
CYME_CMP065C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cme03021
]
CYME_CMP065C
03036 Chromosome and associated proteins [BR:
cme03036
]
CYME_CMP065C
03400 DNA repair and recombination proteins [BR:
cme03400
]
CYME_CMP065C
Enzymes [BR:
cme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CYME_CMP065C
Transcription machinery [BR:
cme03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CYME_CMP065C
Chromosome and associated proteins [BR:
cme03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
CYME_CMP065C
DNA repair and recombination proteins [BR:
cme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CYME_CMP065C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
nSTAND3
AAA_11
PhoH
Motif
Other DBs
NCBI-GeneID:
16995959
NCBI-ProteinID:
XP_005537757
UniProt:
M1UUY9
LinkDB
All DBs
Position
16:165409..167757
Genome browser
AA seq
782 aa
AA seq
DB search
MIFNVENVKVYFPYDYVYPEQYAYMRELKRALDSNGHCILEMPTGTGKTVTLLSFITSYQ
LAHREVRKLIYCTRTVGELEKVLSELEVVIRYRDAQLEKAGKRDQAAAVLAVGLTTRRNL
CLQSAVSKAESREEADSLCRSLTASWVRESHSAAIARFEKNPDLEDLPTTLCQFYEGYRR
EGNDAILPSGIYTLEKVLQIGRERGWCPYYTVRHTMNFANVIVYNYQYLLDPKIAGLISR
ELSRECIVVFDEAHNIDNVCIDALSVSLRLDDLRRAQANVVSLRNRIQEIRTHDERRLLE
EYRRILQGIRRPADVDAFTIEASPVIPEDVLQETIPGNIRRGEHFLLFLLRLIDFFRQRM
RSTQVTQDTPRNFLHALMPSVQIPDSKPLRFCSDRLASLLQTLEISNVRDFVSLQKLAHF
ATLLGTYSQGFSVIMEPYDERAPNVPDPVLQLSCLDASIGMRPIFTRFQSVILTSGTISP
LDLYARILGFRPAVAHSLNISLHRASICPMVIARGSDQIAISSKYDSRRDPSVIRNYGAL
LVELASVVPDGVVGFFTSYIYLESVVQMWHQMGIIQKLLEHKLVFIETPDIFESSVALEN
YRRACDSGRGAIFLCVARGKVAEGIDFDRHYGRCVVIIGVPFQYTESRVLRARLEFLREH
LQIREGDFLTFDAMRQAAQCMGRVIRSKVDYGLMILADRRYNRAQNRSKLPLWIQSHLDE
GKVDLSTDMALGIIQEFLIRMAQPLDRKEMIGTTLLREIDLQAPGDTSFSETASPIALMG
SA
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgatcttcaatgtagagaatgtcaaggtttactttccctacgactacgtctatcctgag
cagtacgcgtatatgcgcgagttgaagcgtgcgctcgactcgaatgggcactgcattctt
gaaatgccgaccggcacgggaaagacggtgacccttttatcgttcatcacctcgtaccag
cttgcccacagagaggttaggaagctgatctactgcacgcgcactgttggagaactggag
aaagtcctatctgagctggaggtcgtaatcaggtaccgcgacgcgcaacttgaaaaggca
gggaaacgcgaccaggctgccgcggtcttggcggtaggcctcacaactcgacggaacctg
tgtttgcagtcggcagtctccaaggccgagagtcgcgaagaggccgactcgctctgccga
tcactcaccgcgagttgggttcgggaatctcactcggccgcaatcgctcgttttgagaag
aaccccgaccttgaagacctacccaccacgctatgccagttctacgagggctatcgacgg
gaaggcaacgatgcgatcctaccttcggggatctacacgctcgagaaggtactccagatc
ggtcgagagcggggctggtgcccctactacacggttcgacataccatgaatttcgccaat
gtgattgtgtacaattatcagtacctgctggatccgaagattgcaggcctcatttcgcga
gaactctcccgtgagtgtatcgttgttttcgacgaggcacacaatatcgataatgtctgc
atcgatgcgctgagcgtgagtcttcgactggacgacctgcgacgtgctcaagcaaacgtt
gtaagcttgcgcaatcggatccaagaaattcgaacacatgacgaaaggcgtctccttgag
gaataccgtcgcatcctacaaggcattcgacggcccgcggacgtggacgccttcacaatc
gaagcctcgcccgtcattccagaagatgttttgcaggagaccatcccgggcaatatccga
cgaggtgaacactttctcttgtttctgcttcgattgatcgatttcttccgacaacgaatg
cgatcgacgcaagtgacccaggatacacctcggaatttcctccatgctctgatgccgtca
gttcagatccctgactcgaaaccgttgcggttttgttcggatcggcttgcgtcactgctg
caaacgctggaaatcagcaatgttcgcgattttgtgtcgctccaaaagcttgcacacttt
gcaacgctgcttggaacctattcgcagggcttttccgtgatcatggaaccgtacgatgag
cgcgccccgaacgtgccggatcctgtcttgcaattgagttgtctggatgcctctatcggg
atgcgaccaattttcacccgtttccagtcggtgattctgacctcgggaacgatctcaccc
ctggatctctatgcgcgtatcctgggcttccgacctgcggtcgcacactcgctgaacata
tcgctgcaccgggcgtccatttgtccgatggtgatcgcccgcggctccgaccagatcgcg
atcagcagcaaatacgatagccgcagagatccgagcgtcattcgcaactatggtgcgcta
ctggtcgagctggccagcgtcgtaccagatggcgtcgttggatttttcacgagttacatt
tatctggaaagcgtcgtgcagatgtggcaccagatgggaattattcaaaagttgctagag
cacaagctcgtcttcatcgagacgccggacatttttgagagttcggttgcgctggagaac
taccgacgagcttgtgatagcggccgaggagcgatctttctctgcgttgctcggggaaaa
gttgctgaaggaatcgattttgaccgacactatgggcgctgcgtcgtcataatcggcgtg
ccgttccagtacacagaaagtcgtgtcctgcgcgctcggctggagtttcttcgcgagcac
ctgcagatacgcgagggtgactttttaacgtttgacgcgatgcgacaggctgcgcaatgc
atgggacgggttatccgttctaaagtggattacggactcatgattctggcagatcgtcgc
tataatcgggcgcagaatcggagcaaactgccgctatggattcagagccatctcgatgag
ggcaaagtggacctcagcaccgacatggcgttgggtatcattcaagagtttctgatccga
atggcgcagccgctggatcggaaggaaatgatcgggacaacgctgcttcgtgagatcgat
ctgcaggcgcctggggacaccagtttttcggagaccgcatcgccaatagcgctcatggga
tccgcttga
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integrated database retrieval system
