| Entry |
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| Name |
(RefSeq) DNA excision repair protein ERCC2/XPD
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| KO |
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| Organism |
cme Cyanidioschyzon merolae
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:cme00001]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CYME_CMP065C
09124 Replication and repair
03420 Nucleotide excision repair
CYME_CMP065C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:cme03021]
CYME_CMP065C
03036 Chromosome and associated proteins [BR:cme03036]
CYME_CMP065C
03400 DNA repair and recombination proteins [BR:cme03400]
CYME_CMP065C
Enzymes [BR:cme01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CYME_CMP065C
Transcription machinery [BR:cme03021]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CYME_CMP065C
Chromosome and associated proteins [BR:cme03036]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
CYME_CMP065C
DNA repair and recombination proteins [BR:cme03400]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CYME_CMP065C
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
16:165409..167757
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| AA seq |
782 aa
MIFNVENVKVYFPYDYVYPEQYAYMRELKRALDSNGHCILEMPTGTGKTVTLLSFITSYQ
LAHREVRKLIYCTRTVGELEKVLSELEVVIRYRDAQLEKAGKRDQAAAVLAVGLTTRRNL
CLQSAVSKAESREEADSLCRSLTASWVRESHSAAIARFEKNPDLEDLPTTLCQFYEGYRR
EGNDAILPSGIYTLEKVLQIGRERGWCPYYTVRHTMNFANVIVYNYQYLLDPKIAGLISR
ELSRECIVVFDEAHNIDNVCIDALSVSLRLDDLRRAQANVVSLRNRIQEIRTHDERRLLE
EYRRILQGIRRPADVDAFTIEASPVIPEDVLQETIPGNIRRGEHFLLFLLRLIDFFRQRM
RSTQVTQDTPRNFLHALMPSVQIPDSKPLRFCSDRLASLLQTLEISNVRDFVSLQKLAHF
ATLLGTYSQGFSVIMEPYDERAPNVPDPVLQLSCLDASIGMRPIFTRFQSVILTSGTISP
LDLYARILGFRPAVAHSLNISLHRASICPMVIARGSDQIAISSKYDSRRDPSVIRNYGAL
LVELASVVPDGVVGFFTSYIYLESVVQMWHQMGIIQKLLEHKLVFIETPDIFESSVALEN
YRRACDSGRGAIFLCVARGKVAEGIDFDRHYGRCVVIIGVPFQYTESRVLRARLEFLREH
LQIREGDFLTFDAMRQAAQCMGRVIRSKVDYGLMILADRRYNRAQNRSKLPLWIQSHLDE
GKVDLSTDMALGIIQEFLIRMAQPLDRKEMIGTTLLREIDLQAPGDTSFSETASPIALMG
SA |
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| NT seq |
2349 nt +upstreamnt +downstreamnt
atgatcttcaatgtagagaatgtcaaggtttactttccctacgactacgtctatcctgag
cagtacgcgtatatgcgcgagttgaagcgtgcgctcgactcgaatgggcactgcattctt
gaaatgccgaccggcacgggaaagacggtgacccttttatcgttcatcacctcgtaccag
cttgcccacagagaggttaggaagctgatctactgcacgcgcactgttggagaactggag
aaagtcctatctgagctggaggtcgtaatcaggtaccgcgacgcgcaacttgaaaaggca
gggaaacgcgaccaggctgccgcggtcttggcggtaggcctcacaactcgacggaacctg
tgtttgcagtcggcagtctccaaggccgagagtcgcgaagaggccgactcgctctgccga
tcactcaccgcgagttgggttcgggaatctcactcggccgcaatcgctcgttttgagaag
aaccccgaccttgaagacctacccaccacgctatgccagttctacgagggctatcgacgg
gaaggcaacgatgcgatcctaccttcggggatctacacgctcgagaaggtactccagatc
ggtcgagagcggggctggtgcccctactacacggttcgacataccatgaatttcgccaat
gtgattgtgtacaattatcagtacctgctggatccgaagattgcaggcctcatttcgcga
gaactctcccgtgagtgtatcgttgttttcgacgaggcacacaatatcgataatgtctgc
atcgatgcgctgagcgtgagtcttcgactggacgacctgcgacgtgctcaagcaaacgtt
gtaagcttgcgcaatcggatccaagaaattcgaacacatgacgaaaggcgtctccttgag
gaataccgtcgcatcctacaaggcattcgacggcccgcggacgtggacgccttcacaatc
gaagcctcgcccgtcattccagaagatgttttgcaggagaccatcccgggcaatatccga
cgaggtgaacactttctcttgtttctgcttcgattgatcgatttcttccgacaacgaatg
cgatcgacgcaagtgacccaggatacacctcggaatttcctccatgctctgatgccgtca
gttcagatccctgactcgaaaccgttgcggttttgttcggatcggcttgcgtcactgctg
caaacgctggaaatcagcaatgttcgcgattttgtgtcgctccaaaagcttgcacacttt
gcaacgctgcttggaacctattcgcagggcttttccgtgatcatggaaccgtacgatgag
cgcgccccgaacgtgccggatcctgtcttgcaattgagttgtctggatgcctctatcggg
atgcgaccaattttcacccgtttccagtcggtgattctgacctcgggaacgatctcaccc
ctggatctctatgcgcgtatcctgggcttccgacctgcggtcgcacactcgctgaacata
tcgctgcaccgggcgtccatttgtccgatggtgatcgcccgcggctccgaccagatcgcg
atcagcagcaaatacgatagccgcagagatccgagcgtcattcgcaactatggtgcgcta
ctggtcgagctggccagcgtcgtaccagatggcgtcgttggatttttcacgagttacatt
tatctggaaagcgtcgtgcagatgtggcaccagatgggaattattcaaaagttgctagag
cacaagctcgtcttcatcgagacgccggacatttttgagagttcggttgcgctggagaac
taccgacgagcttgtgatagcggccgaggagcgatctttctctgcgttgctcggggaaaa
gttgctgaaggaatcgattttgaccgacactatgggcgctgcgtcgtcataatcggcgtg
ccgttccagtacacagaaagtcgtgtcctgcgcgctcggctggagtttcttcgcgagcac
ctgcagatacgcgagggtgactttttaacgtttgacgcgatgcgacaggctgcgcaatgc
atgggacgggttatccgttctaaagtggattacggactcatgattctggcagatcgtcgc
tataatcgggcgcagaatcggagcaaactgccgctatggattcagagccatctcgatgag
ggcaaagtggacctcagcaccgacatggcgttgggtatcattcaagagtttctgatccga
atggcgcagccgctggatcggaaggaaatgatcgggacaacgctgcttcgtgagatcgat
ctgcaggcgcctggggacaccagtttttcggagaccgcatcgccaatagcgctcatggga
tccgcttga |
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