Cyanidioschyzon merolae: CYME_CMP114C
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Entry
CYME_CMP114C CDS
T00175
Name
(RefSeq) MutS family DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CYME_CMP114C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cme03400
]
CYME_CMP114C
DNA repair and recombination proteins [BR:
cme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
CYME_CMP114C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
DUF3576
Motif
Other DBs
NCBI-GeneID:
16996050
NCBI-ProteinID:
XP_005537793
UniProt:
M1VFK9
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Position
16:complement(278185..281127)
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AA seq
980 aa
AA seq
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MVHVQGAHGSDALVQVFGGVSGVDKFGREWFESQLEADAAVAYDPSTVLLVLQFASTSAG
FWLLSGDAGLLSTQLQTESVRVSVTCQAQQRVLEWYLARVRASTNATLATWVLAGLEAGK
AVAVYAAGSRLGSASTSEARGFGFPLQIANKWFLAAAGSPARVGPLTSYLPGNTRAQDSS
GLADGDSVVDAEGIALVGETAGVLAVRTRATGEQSNTGHRHCRMVAACHCIPHAGLFRVI
ECQEDASGEAFLLTDWIERALVRSGARELVLQDGDLAEYELHQLDAALERIGGIARAMLR
PVRRGGLGAEHDLRWLVAESETPDSCQRDDDAWRPEALTLDEMFSMKLATDCAHMCVRFL
DLGQRVGERGRYRIEQLAWRQNLQLDAAALKALHVLWGDETGPASPSSPPPGSLWCLLDR
CRTPMGSRLLRTALIEPLGNREAIERRLDLVELLVHDVIARQRLADYHLKGFADLITIAR
RLARDKTSLRQLVRLYQSLVRLPALRSELEDLLLAHTETRPRCCQVLRSDIADRLAAVAP
AAQEFIEDVERFIDLERITNHEYLLRPSMSTEMTQIRGEMDTCLEEMNRTYQQTIAALQQ
DDGVRGSGGDWLKLERKDGLGFCFRVTRKDEVCIRGKESITVLETRKDGVRFTTSALRRW
SSAYTAAEQRYVAVQRSTLAQVFGHFAKYASMLEVLGHVLALLDMLVAFAMISAERQFCR
PRLVESDEFEAHESSGVILRGLRHPLVELALQGEHTFVANDVVLTHPRRLLLITGPNMGG
KSVTLRSVGLAVLMAHCGCFVAADAASLPVVDRILVRVGAGDMQTRGISTFMAEMLDMST
ILRHATSSSLVLVDELGRGTSTAEGFGLAAALCEALASRASWTLFATHFHELTKLAQGAW
SHRMLNAHVAVAQVHRDNDDSEINDRGRGTPAASLVFLYELRPGPSERSFGIHIAEMAGF
PHPVIDMARAKVSALENTDA
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggttcacgtacagggagcgcacggctctgatgccctcgttcaggtctttggaggtgtt
tctggggtggataaatttggacgagagtggttcgagtcacaactggaggcggatgccgcg
gttgcgtacgatccttccacggtgctgcttgtgctccagttcgcgtcgacatccgctggt
ttctggttgctgagcggcgatgccgggctgctttctacgcagctgcaaactgagagcgtt
cgagtttcggtgacgtgtcaagcgcagcagcgggtgctggaatggtacctggctcgggtg
cgagctagcacgaatgcgacactagcaacctgggttctggccggactggaggctggcaag
gccgtcgcagtttacgccgcagggagccggttgggaagcgcgagtacaagtgaagcacgc
ggtttcggatttccgctacaaattgcgaataagtggtttctcgcagcggctggcagtccg
gctagagtaggtccgctcacaagctatctaccgggaaacacgcgagcccaggacagctcc
ggactcgctgatggcgacagtgtcgtagatgccgaaggcatcgcgcttgttggtgaaacg
gccggcgtgctcgctgtacgtacgagagccacaggtgaacagagcaacactgggcaccgc
cactgccgtatggtcgccgcttgccactgcattccgcatgcggggctttttcgggtgatc
gagtgccaggaggacgcctctggtgaagcctttctgctaactgactggatagagcgggct
ctggtgcggagcggagcacgagagcttgtcctccaagacggcgatcttgccgaatatgaa
cttcaccagttggacgctgccctcgaacggattggcggcatcgctcgcgccatgctccgc
ccagtgcgccgtggaggcctaggcgccgagcacgaccttcggtggcttgttgctgaatcc
gaaactcccgactcatgccaacgtgacgatgacgcttggcgacccgaggcactaacgctt
gatgagatgttctcgatgaaactagcaacagattgcgcgcacatgtgcgtcaggtttctt
gatttgggtcagcgcgttggtgaacggggtcgctaccgcattgagcagctcgcttggaga
cagaatctccagctcgacgctgctgccttgaaggcactccatgtgctttggggcgatgaa
accggtccggcatcgccgtcgagtcctccaccgggctccctctggtgcctgcttgaccgg
tgtcgaacaccgatgggctcgcgactgctgcgaactgccctgattgaaccgctgggtaac
cgcgaagccatcgaacgacggctcgatctggtggagctcctggtccatgatgttatcgcg
cgacagcgactcgctgattatcatctgaaaggattcgcggatctcatcaccatagcgcgg
cgacttgcgcgagacaaaacatcgctgcgacaactggtgcgcctctatcagagcctggtg
agactgccggccttgcgctcggaactggaagatctgttgctggcgcacacagagacccgt
ccccggtgttgtcaagtgcttcggagcgatattgctgatcgattggcggcagttgcacca
gcagctcaggaatttatcgaagatgtggagcgtttcatcgatttggagcgcattacaaac
cacgagtacttgctgcgaccgagcatgagcactgagatgacccagatccgtggggaaatg
gacacttgtcttgaagaaatgaatcggacgtatcagcagacgatagcagcgctccagcaa
gatgacggcgtgcgtggatctggcggtgactggctcaaactagagcgcaaagacggactc
ggattctgctttcgggtgacgcgcaaggatgaagtttgcattcgcggcaaagaatccatt
accgtccttgaaacgcgcaaggacggtgttcggttcacaacgagcgctcttcggcgctgg
agtagcgcgtacaccgccgcggagcaacgctatgtggcggtgcagcgctccacattggcg
caagtgtttggacactttgccaaatatgcgtccatgctcgaggttctcggccacgtcctt
gcgcttctggacatgctcgtcgcatttgcgatgatatcagcggagcgtcagttctgtcgc
ccgcgactagttgaatcggacgaattcgaagcgcacgaaagcagcggcgtcattttgcga
ggcctccgccatcccctggtggaactcgcgctccaaggcgagcacacttttgtcgccaat
gatgtggtgctcacccatccgaggcgtctgctcctgattaccggccccaatatgggcggc
aaatcggtaacgctgcgctcggtcggactcgccgtgctcatggctcactgcggttgtttc
gtggccgccgacgctgcctcgttacccgtagttgaccggatcttggtgcgtgtcggtgct
ggcgatatgcaaacccgcggcatcagtaccttcatggccgagatgctcgacatgtcgacc
attcttcggcacgccacatcgtccagtctggttctggtcgacgagcttggacgcggaacg
agcacagctgagggcttcggcctcgctgccgccttgtgtgaagcgctggcgtcgcgcgct
tcatggacgctcttcgcgacccactttcatgagcttaccaagcttgcccaaggagcctgg
agccatcggatgctgaacgcccatgtcgccgtcgctcaggtgcatcgcgacaacgacgac
agcgaaatcaatgaccgcggcagaggcactcccgctgccagccttgtctttctctatgaa
ctacgcccgggaccgagcgaaagatcctttggtatccatattgctgaaatggctggattc
ccgcaccctgtcatcgatatggcgcgtgccaaagtcagcgccctagagaacactgacgct
tga
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