Cyanidioschyzon merolae: CYME_CMP170C
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Entry
CYME_CMP170C CDS
T00175
Name
(RefSeq) similar to formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CYME_CMP170C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cme03400
]
CYME_CMP170C
Enzymes [BR:
cme01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CYME_CMP170C
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CYME_CMP170C
DNA repair and recombination proteins [BR:
cme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CYME_CMP170C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Motif
Other DBs
NCBI-GeneID:
16996103
NCBI-ProteinID:
XP_005537837
UniProt:
M1UV75
LinkDB
All DBs
Position
16:433407..434189
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AA seq
260 aa
AA seq
DB search
MPELPAVERARRMIDALCKSYRRINVQSAPDPKHASEFVDKLFEGRLGLDLLERRVCVGH
VLRQLGRHGKNLWFEFDEPPHVFVRFRMAGSFVVRGHEDGYVYETFRRRTAACRFHDSGT
PLVSVWPPKHTHIVFSFAPCSPGVDSASINGISVREFALVDPRKVTRMRLSDSSCPSVEI
RSLIGGFDALHALPPIERFERKMLVYPKANIKSLLLGQRFIAGLDNWMVDEVLYYAHIHP
ESRTCDLTRIDVAALHQSIA
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgccagagctgccagcagttgagcgggctcgtcgtatgatcgatgccttatgtaagagc
tatagacggataaacgttcaatccgcacccgatccgaaacatgcctctgagtttgtggac
aagcttttcgaaggcaggctggggctggacctgctcgagcgacgtgtctgcgtaggtcat
gtgctgcggcaacttggccgtcacggcaagaacctgtggtttgagttcgacgaacctccc
cacgttttcgtccgctttcgaatggctggctctttcgtggttcgtggtcacgaagacggc
tacgtttatgagacttttcgccgacgtactgccgcctgtcggttccacgactcaggaacg
cccctcgtctcagtctggccaccgaagcatacacacattgtttttagttttgctccctgc
tccccaggagtagattctgccagtataaacggtatctctgtccgagagttcgcgctggtc
gacccgcgaaaggttacgaggatgcgcctcagcgactcgtcgtgtccttctgtcgagatt
cgaagcctcataggaggcttcgatgcgctgcatgcgctccctcctattgagcgcttcgaa
aggaaaatgttagtgtacccgaaagcgaatatcaaatcgttgcttttgggccagcgcttc
atcgctgggctcgacaattggatggtcgacgaagttctttattacgctcatattcacccg
gagagtcgcacttgtgacctcactcgtatcgatgttgcagcattgcatcagagcatcgca
taa
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