KEGG   Cyanidioschyzon merolae: CYME_CMQ098C
Entry
CYME_CMQ098C      CDS       T00175                                 
Name
(RefSeq) DNA polymerase epsilon, catalytic subunit
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03030  DNA replication
cme03410  Base excision repair
cme03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CYME_CMQ098C
   03410 Base excision repair
    CYME_CMQ098C
   03420 Nucleotide excision repair
    CYME_CMQ098C
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cme03032]
    CYME_CMQ098C
   03400 DNA repair and recombination proteins [BR:cme03400]
    CYME_CMQ098C
Enzymes [BR:cme01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CYME_CMQ098C
DNA replication proteins [BR:cme03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    CYME_CMQ098C
DNA repair and recombination proteins [BR:cme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      CYME_CMQ098C
SSDB
Motif
Pfam: POL2_thumb DNA_pol_B_exo1 DUF1744 DNA_pol_B RNase_H_2 DNA_pol_B_exo2 zf-DPOE
Other DBs
NCBI-GeneID: 16996549
NCBI-ProteinID: XP_005538049
UniProt: M1VKI4
LinkDB
Position
17:complement(224867..231538)
AA seq 2223 aa
MALDGYLDPDEEQLSSGAEDEDAEVDVRTLPAHDTQVERDSRAALDARDRMAGFFPLPPV
LDGFRAPERIGWLLNVAVAAVHDPASGRQVSALDCYFLSGDEGGGDFRVTLCYRPYFYVG
CTPGKETDVESALKRDFSDVLSGIHRAELEDLDMLNHLATRARRLFLRVETFTTDDLVRI
RSHLLSYANGKQNPSLIPGDLSTDASASLSSAAQRIRRTDPYENIVELREYDVPYVTRVC
IDCDIRCGYWYRVEHSLSSGGAAPKLHLLSELVERANPTVLAYDIECTKAPLKFPDPYAD
DEIMMISWMLDGRGYLGVNRQIIAEDIHGFTYAPKPEFESSFVVFNEPDEASLLRRFFAE
ARAAQPRVYVTYNGDAFDWFFVHVRASRLGINILDKIGMSFSAARGLCRGRAAVHMDCIH
WVNRDSYLPQGSRGLKAVTRALLGYEPHELDPEEMLTAARTRPQELAAYSVSDAVATYQL
YMKYVQPFIFSLCNILPFGPDDVLRKGSGTLCESLLMCEAHRRNIVAPNKFKNNATERTF
QSRLLANETYIGGHVEALQSGIYRADLPIPFRIDTAAVRELQENLDQFLQFAIEREQDLH
LEEITDYENVRADLAERLKRLAEQPLLQERPLILHLDVGAMYPNIILTNRLQPHACVTRE
TCAACDFNGTSDCRRKMHWVWRGECYPATIGEVQSIRASVLTTVRARRRQGEKVSDDDAE
AMYRKRLREYCMKVHKRVLEPTVQTREAWICQRENPFYVDTVRAFRDRRYEYKRLLKQWR
KALAESGGASIEARNMCIVYDSMQLAHKCILNSFYGYVMRRAARWYSMEMAGVVTQTGAS
IIRLAREWIERVGLPLELDTDGIWCAIPATFPNDITLHTRSGREISISLLCTVLNTKVAA
QYTNHQYQEWSPDEGTYKQRSEFSIFFEIDGPYRAMVLPASREEGKSIKKRYAVFQRDGS
LAEIKGFELKRRGELKLIKVLQSEIFGRFLEGSTLAECYAAVGETANLWLDVLDSNGGLL
SDAELLELVAEQTHMSKPLAAYIQAGQKSSAITCAKRIQEFLGKDMVRDKGLACRYVIAR
YPLGTQVTERAIPVQIFSADLEQRQALLRKWLREPVYNFREILDWDYYRGRLANTVQRII
SIPAACQGVPNPVPRIEHPDWLRRRLRDLACAQKQTTLKSFFRADQKATPDLEDIVVVKT
GPLPRRQPCSDARGIANTSLLNAAVAAGAAGAAGATSSVDLARTVLETVSTSLKWTAAGT
SVGFAHSAQEQVTERDASGSRLAPFRAGVQQVVQPGRCRPHSDAAARGEPPSLRPISYQQ
WLEAVAKPQWRLWVRQRRARRSAAAHPAGLRCRLSGLVLEHADLVEPLLVLGIRETGTFQ
TCRVWFQTSRGRVLSLPVHVPHELWLLYRRLPPDALGQPIETSRNRAWCSDELAVHTLTV
RDASVSEAQLTTMARDALCLHAGYLVGLYGVQVSPLLLAVASLGIVCVLKPDAAKQTLRA
LQLQGIALTDLDSVEKRKPADFASPSWIIVCGSHAKDRSGRGIWVIFSPDRIILILVGSF
RSDAETRSTLMRLRHESSVHGDGSLQTLGNALNQTEIIHAQDWKRGLRLLGLTLANRFPG
GARPPLLFLQTAVPVALMRRRVPALNNYPLAVVPHVAADCSYQPTGWEAPAMQRTLQRVT
ALCAQLPLRFQLSDLYGVPIGNLSGDLVAETLDVAVARALLQRGWPLDWLHRGDSLALDV
DTTSDAETWPQVSVPGAYSGICIDLEIQDLPLVAILEADTLYAMDRSQAPSGSLLVQVLR
PLVQTWVGLEANGDQSAALLTSHLHRWIVRGLAGRTSRMLCAELLHLIRKTFHHLMETLA
EMNASVIHATPFRLMLCTHRRQLSEAKAYCRFLLESCRTRPVLRRLIFAPVLRYIRAAFW
HDSDHYWAWTMETTPVQTEAEAPTTTTTTTTTTTTTEAGAIPNGTANGNVALSYRLEYSW
RDAEHWSAPARKQFAALAQGLLQHLALAGQEGQGRAPHVTAAGTVGARAAPAALTPLAAD
QIFFLVKQWSLDREPQAAAQDAHWLFRLLLLYRPWQEALLGVEHAVFRFLKCSPFAYKAK
SLDASHRVIVLDPIVCSRCFAVNVAQLASSQTTEALSTRSCRICACPLSEAQLRYRVAGR
LSALLQTYLVQDGLCDRCGTAQGRLLSDQCECSGSCTTSRWETCTTSRALQSLFAFWNPT
PCT
NT seq 6672 nt   +upstreamnt  +downstreamnt
atggcactggacgggtatcttgaccctgatgaggaacaactttcctctggggctgaagat
gaagacgctgaagtggacgtgcggacgttgcctgcgcacgacacgcaggtagaaagagac
tcgcgagctgcgctggatgctcgggatcggatggctggatttttcccattgcccccggtt
ctggacggttttcgagcaccagaaaggatcggatggttgctaaatgtggccgttgcagcc
gtacatgacccagcgagtggccgccaagtgagcgcattggattgttacttcctttccggg
gatgaaggtggtggcgactttcgtgtgacgctgtgttataggccttatttctatgtggga
tgtacaccaggaaaggagactgatgtagagtcggcgctgaaacgggatttcagcgatgtg
ctcagtgggattcatcgggccgaactcgaggacctggatatgctcaatcatttggcgacg
cgagcccgacgtttgttccttcgtgtggaaacgtttacaaccgatgatttggtaagaatc
cgcagtcatttgctgtcctatgcgaatggtaagcaaaaccccagcctcatacctggggat
ctcagtacagacgcatccgcttccctctcgagcgcggcacagcggattcgtcgaacagat
ccgtacgaaaacatcgtggaactccgcgaatacgacgtcccctatgtgacgcgggtctgc
atcgattgcgacattcgctgcggttattggtatcgcgtggaacattcattatcctcggga
ggggctgctccaaaattacacctcttgtccgagctcgtcgagcgtgcgaatcctaccgtg
ctcgcgtacgacatcgagtgcaccaaggccccgctgaagtttcccgacccatatgcggat
gatgaaatcatgatgatttcatggatgttagacggccgaggctatctaggcgtaaatcgc
cagatcatagcagaggacatccacgggtttacatacgctccgaagcctgagtttgaatct
agctttgtcgtcttcaacgaacccgatgaagcatcgctactgcggcgctttttcgccgag
gcgcgagccgcacaaccgcgggtctacgtaacgtacaacggagacgccttcgattggttt
ttcgtgcatgtccgtgctagccgtctaggcatcaacattctggacaagatcggaatgtcg
ttctcggcagcaagaggcttatgccgcggacgcgctgcagtccacatggattgcatccat
tgggtgaatcgagatagctaccttccgcaaggctcccgtggtctcaaagcagtgaccagg
gctttgctaggttacgaaccgcacgaactcgaccccgaggagatgctaacagctgcgcgg
acacggcctcaggaactcgctgcctactcggtgtccgatgcagtcgccacctatcagttg
tatatgaagtatgtccaacctttcatattttcgttgtgcaacattttgccatttggaccg
gatgatgttcttcgaaaaggctcgggcactctctgcgaaagcctcttgatgtgtgaggcc
catcggagaaacatcgtagctccaaacaagttcaaaaacaatgcgacagaacgaacgttt
caaagccgcttgctcgccaatgagacctacattggtggacatgttgaggcactgcagtca
ggtatctaccgtgcagaccttcccatcccattcagaattgacacagcggctgttcgggag
ctgcaagaaaacttggaccagttccttcagttcgcaatcgagcgtgaacaggatttgcat
ctggaggaaattacggactatgaaaatgtgcgggcagacctcgcggaacgactcaaacgc
cttgccgagcagccgctgctgcaggagcgccccctgattctccacctggatgtgggcgcc
atgtacccgaatattatcctgacgaaccggttgcagccgcacgcttgcgtcacgcgggaa
acttgcgcagcctgtgattttaacggcacgtctgactgccgccgcaagatgcactgggtc
tggcgaggagagtgctatcctgcaaccattggagaggtgcagagtatccgcgcctcagtc
ctgacgaccgtacgggcccgtcgacggcaaggagagaaagtttcggatgatgacgctgag
gccatgtacaggaaacgactacgggagtactgcatgaaggtccacaaaagagtcctcgaa
ccgaccgttcagacgcgagaagcctggatatgtcagcgcgagaatcccttctacgtagac
accgtgcgagcgtttcgggaccgtcgctacgaatacaagcggctactcaagcagtggcgc
aaagcgctggcggaaagcggcggcgcctccatcgaagcgcgcaacatgtgcatcgtctat
gattcaatgcaactcgcgcacaagtgtatcctgaactccttttacggctacgtcatgcgc
agagctgctcgctggtactccatggaaatggcgggtgttgtcacacagaccggtgcgagt
atcattcgcctcgcccgcgagtggatcgagcgcgtcggcttgccacttgagctcgacact
gacggtatatggtgcgcgatcccagctacctttccgaacgacataacactccatactcgc
agtggtcgagagatttccatttctttgctctgcaccgttctcaacaccaaagtcgccgca
cagtatacgaaccatcaataccaggagtggtcaccggacgagggaacatacaagcagcgc
tccgagtttagtatctttttcgagatagacggaccatatcgagcgatggtactccccgcc
agtcgcgaggaggggaaaagcatcaagaaacgttacgccgtattccagcgcgatgggagt
ctcgccgaaatcaaaggttttgagctgaaaagaagaggcgaactgaaactgatcaaggtg
cttcagagtgagatctttgggcgttttttagaaggcagcaccctagccgaatgctatgct
gccgttggcgagactgcgaacctctggctcgatgtgctcgacagtaatggcggcctgctc
agtgatgctgagcttctcgaactcgttgcagagcagacacatatgagcaagccgctagca
gcatacatacaagctggccagaagagcagcgcaataacctgtgcgaaacggatacaggaa
ttcttgggcaaggacatggttcgcgacaagggcctcgcctgtcgctacgtgattgcgcgg
tatcctctgggaacgcaagtgacggagcgagctattcccgtgcagatcttttccgcagac
ctcgagcaacgccaggctttgttgcgcaagtggttacgggagcccgtgtacaatttccgc
gaaatcctggactgggattattatcgcggccgcctcgcgaacaccgtgcagcggatcatt
tccattccagcagcttgccaaggcgtaccgaatccggtgcctcgtattgagcatcccgac
tggttgcgacggcgcttgcgagaccttgcctgcgcgcagaagcaaactacgttgaagagc
ttcttcagagccgaccagaaggccacacccgacctcgaggatatcgttgtcgtcaaaacc
ggaccgttgccgcgcaggcagccttgcagcgatgctcgcggcattgcgaacacgtctttg
ttgaacgcagcagttgccgctggtgccgctggtgccgctggtgctacgtcgtcggttgac
cttgctcgtaccgtacttgagactgtgagcacctcgttgaagtggactgctgctggtacg
tcggttgggtttgctcatagcgctcaggaacaagttactgagcgtgacgcatcaggttca
cgtttggctccgtttcgggccggtgtgcaacaggtggttcagccaggccgttgtcgacct
cattcggacgcagcagcccgtggcgagccgccgtcattgcgaccgatatcgtaccagcag
tggcttgaagcggttgccaagccgcagtggcgtctctgggtccgccagcggcgagccagg
agaagtgcagcagcgcacccagcaggtctacgttgccgcctcagcggactggttctcgag
cacgccgaccttgtcgaaccgcttctcgtccttggtattcgcgaaacaggaactttccaa
acatgtcgagtttggttccaaacgagcaggggacgtgtgctctcgctgcctgtccacgtg
ccgcacgaactctggttgctctaccgcagactcccgcccgacgcactgggtcaaccgatc
gaaacgagcaggaacagagcctggtgcagtgacgagcttgccgtgcacacgctcaccgtc
cgtgacgcgagcgtcagcgaggcccagttgaccacaatggcccgggacgctctctgtcta
cacgctggctatctggttggactttatggtgtgcaggtgtcaccgctcttgcttgccgtt
gcctcgctgggcattgtttgtgtgctgaaaccggatgcagccaaacagacgttacgtgcg
cttcagctgcagggcatcgcgctcaccgacctggactcggtcgagaaacggaagcccgca
gacttcgcttctccttcatggatcatagtctgcggtagtcacgcaaaagaccgttctggc
cgcggcatttgggtcatcttcagtcccgaccgcatcattctgatcctggtcggttcgttc
cgatccgacgctgaaacgcgatccaccttgatgcgcctgcgacacgaaagcagcgtccat
ggcgatggttcactgcaaacgctcggaaacgcactcaatcagacggagattattcacgct
caggactggaagcgaggcctccgcctgctcggactcacgttagcgaatcgtttccccggg
ggggctcggccaccgttgttgtttctgcagactgccgtgcccgtcgcgctgatgcgccgc
cgtgttccggcgctgaacaattacccgctcgctgtggtaccgcacgtcgccgcggattgc
tcttatcagccgactggctgggaggcaccagccatgcagcgcaccctgcagcgagtgaca
gcgctgtgcgctcagctgccgctgcgtttccaactcagtgacctatatggggtgccgatc
ggcaacctcagtggcgacctggttgcagagacgcttgatgtggccgtggcgagggcgctg
ctgcagcgaggctggccgctggactggcttcatcgaggtgactccctggccttggatgtg
gataccacgagcgacgctgagacctggccccaggtgtcggttccgggtgcgtattcgggt
atttgcattgatctggagattcaagacttgccactggttgccattctcgaagctgatacg
ctctacgcgatggatcgctcacaagcaccgtccggtagcttgctggtacaagttcttcgg
ccgctggtgcagacctgggtcggcctcgaagcgaacggggaccagagcgcagcgctctta
acgagtcacttgcatcggtggatcgttcgaggccttgcgggtcggacaagtcgcatgctc
tgtgctgagctgctgcatctcattcggaagacttttcaccatctcatggaaacacttgcc
gaaatgaatgcctctgtgatccacgcgacgccgttccggctgatgctctgcacgcaccgg
cgacagctatccgaagcaaaagcctactgtcggttcctgctcgagtcgtgccgcacgcgg
ccggtgctgcggcgcctcatttttgcgcctgtgcttcgctacatacgcgcggcattctgg
cacgattccgatcactactgggcatggaccatggaaacgacgccagtccagaccgaagca
gaagcaccgacgacgacgacgacgacaacaacaacaacaacaacaacagaggcaggagct
ataccaaacggaacagcaaatgggaacgttgcgctgtcgtatcggctcgagtacagctgg
cgcgatgcggagcactggagtgcgcctgcccgcaaacagtttgcggccttggcccagggc
ctgctccagcatctcgcccttgctggacaagagggccagggccgcgctccccatgtgaca
gcagccggcaccgtgggcgctcgtgccgccccagcggcgctcacgcccttggctgccgat
caaatctttttccttgtgaagcaatggtcgcttgatcgggagcctcaggcagcagcccag
gatgcgcactggctcttccgcctcctgctactctatcgtccatggcaagaggcgctactc
ggagttgagcatgcggtcttccgcttcctcaaatgcagtccgtttgcgtacaaagcgaaa
tcgctggacgctagccatcgggtcatcgttcttgaccctattgtctgcagccggtgcttt
gcagtgaatgtggcccagcttgcgtcgagtcagacgacggaagctttgtcaacgcgaagc
tgtcgtatatgtgcgtgtccgttatcggaagcacaacttcggtaccgagtcgcgggacgt
ttatccgcgcttttacaaacctatctcgttcaggatggtttgtgcgatcgctgcggcaca
gcccagggccgtctgctcagcgatcaatgcgagtgcagcggcagttgcacgacaagtcgc
tgggaaacatgcaccaccagtcgagcactgcagtctttgttcgcgttctggaacccgact
ccatgcacgtga

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