KEGG   Cyanidioschyzon merolae: CYME_CMQ221C
Entry
CYME_CMQ221C      CDS       T00175                                 
Name
(RefSeq) probable polyadenylation factor I subunit 2 Pfs2p
  KO
K15542  polyadenylation factor subunit 2
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CYME_CMQ221C
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cme03019]
    CYME_CMQ221C
Messenger RNA biogenesis [BR:cme03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     CYME_CMQ221C
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_EML WD40_Gbeta WDR55 EIF3I Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_WDR35_TULP_N WD_LRWD1 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_WDR41 PEP5_VPS11_N Beta-prop_RIG_1st WD40_MABP1-WDR62_1st Tricorn_2nd Beta-prop_SPT8 Beta-prop_VPS8 NBCH_WD40 Beta-prop_DCAF12 PROPPIN Beta-prop_WDR11_2nd Beta-prop_NWD2_C Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 16996643
NCBI-ProteinID: XP_005538147
UniProt: M1UVQ1
LinkDB
Position
17:557160..558617
AA seq 485 aa
MQNRSDVSQIPEDRRVRYVVQKQTEIFDGKRLRRAMVRKTVDLQAPAARWLLDRTWQQDS
RQGPPLEPSAEYIYRLQPPCAAAFRERPITNACTHFVQHAQNKQKCGINACCWTPEGRRL
ITGATSGEFTLWNGWTFNFETILLAHNLAVRNITWSHDGKFMVSTDQSGIVKYWQSNLNH
LKVFRAHQETIRDLAIAPTDQKLATCSDDQTIRVFDFESPARAGEIQGSPERILRGHGWD
VRSVDWHPTRGLLASGSKDSLIKLWDPKSGKCLTTIHAHKNAVVKVRWNPSNANYLLSGS
RDQTVKLIDIRMMRSVQSFHGHRREVTTLAWHPIQEDTFVSAGYDGSLFFWVLGDPEPAA
VIPNAHATQVWDLSWHPLGHVLVSSGNDTYTRFWTRSRPGDGMRDRYQRSSCRWEHVKLY
ATEDDPLVREVEELEALQGNGGVDGFGESLLDRHVMMVKRQRTTAAQRPPPGLEYVQNDV
QMTKS
NT seq 1458 nt   +upstreamnt  +downstreamnt
atgcaaaaccgcagcgatgtttcacagatccccgaagacaggcgcgtgcgttatgtcgtt
cagaagcagaccgaaattttcgatggaaagcgcctccgtcgggcgatggttcggaagaca
gtggacttgcaggcgcctgcagctcgctggttgctggaccgtacctggcagcaagacagt
cgtcagggaccgccgctggagccctcagctgaatacatctatcggctgcaaccaccctgt
gctgcggcgtttcgagaacggccgataaccaacgcctgtacgcactttgtgcagcacgcg
cagaacaagcaaaagtgcgggataaacgcctgctgctggacgccggaaggccgtcgactc
atcacgggcgctacgagcggcgagtttacactctggaatggttggacttttaactttgag
acgatactattggcccataatctggcggtgcgcaatattacctggagccatgacggcaag
ttcatggtctcaaccgaccagtctggcattgtaaagtactggcagagcaacctcaaccat
ctgaaggtatttcgagcgcatcaagagacaatacgggacttggccatagccccaacggat
cagaaactagcgacttgttcggacgaccagacgatccgggtgttcgactttgagtcgccc
gctcgagcgggtgagatccagggctcccccgagcgcatcctgcgcggacacggctgggat
gtgcgctctgtggactggcacccaacgcgcggcctccttgcgtctggtagcaaggactct
ctgatcaaattgtgggaccccaaatcaggcaagtgcctaacgacgatccatgcgcataag
aatgcagttgtgaaagtgcggtggaaccccagcaatgcgaattacctgctgagcggctcg
cgtgaccaaaccgtcaagttgatcgatattcggatgatgcgatctgtgcagagttttcat
ggacatcgtcgcgaggtaacgacgctggcctggcatcccatccaggaggatactttcgtg
tcggctggctacgacggttcgctgttcttctgggtgcttggcgatcctgagccggcggca
gtcatcccgaacgcccatgcgacccaggtttgggacctctcttggcatccgttggggcac
gtgctcgtaagctccggcaacgatacgtacacccggttctggactcggtcgcggccagga
gacggcatgcgcgatcgctaccagcgcagcagttgtcgctgggagcacgtcaagctgtac
gcgactgaagatgatccgcttgtgcgcgaggttgaagagcttgaagcccttcaaggcaac
ggcggggtcgatggcttcggggaatctctcctcgaccgacacgttatgatggtgaagcgc
cagcggacgactgctgctcagcgacctcctccaggtctggaatacgtccagaatgacgtg
cagatgaccaagagttga

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