Cyanidioschyzon merolae: CYME_CMQ385C
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Entry
CYME_CMQ385C CDS
T00175
Name
(RefSeq) probable pre-mRNA splicing factor ATP-dependent RNA helicase PRP16
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CYME_CMQ385C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cme03041
]
CYME_CMQ385C
Enzymes [BR:
cme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CYME_CMQ385C
Spliceosome [BR:
cme03041
]
Complex C
Other components
Step II factors
CYME_CMQ385C
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HA2_C
OB_NTP_bind
DEAD
HA2_N
AAA_30
AAA_22
Motif
Other DBs
NCBI-GeneID:
16996377
NCBI-ProteinID:
XP_005538271
UniProt:
M1V6J5
LinkDB
All DBs
Position
17:complement(994958..997453)
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AA seq
831 aa
AA seq
DB search
MWAGACAQDSAVELENDSGVSPDAAGPALCALLERHPVVILVAETGTGKSTKVPAFLWKQ
GGFNWIACTQPRRLAAMALASRVATELGVKLGCEVGYSVRFADQTTPGLTHIKYVTDGWM
LRAFVRDPLASAYDLVMVDDAHERSLATDLLLALFRRLLWQQDATANPTSNNPRKLPRLV
VSSATLNADQFSAFFGGAPVLRIVGRRYPVRIAYAISMPEDYVLAAVSQVMQVFGEWCES
KHNQRDRIVDGMDVLVFLTGQEEIERAAQLMKHQAQQTLACSPATTMTTTSKIHRSGGAS
DASATNKSSCSDEGTSMKQPGLGVDSLNRAATQPRVLTVALYGALPSSEQVRICCERPPP
GTLRVILATNVAETSLTLPNVRVVIDSGYVKQRIYDHLEVVPASQAAAEQRAGRAGRSSP
GVCYRLYTREFYSEQMAPELIPEIKRVDLSDAFLLLKRMGIDRLDEIVWLDPPDTANVRR
SLRLLRRLGALTTVAEAETEAAAERTGSQDTENSAVAPPAALSERKLQSCSSAREVLSVP
LGQRMADMPLEARLARALLAAEELGCTRELLSAVAILSTGYPLLTRRGLAEAVPRFCRTK
PNQLRDPLAYNDFLLFARVFDAWKAASDATLWCYRLGISERVLRLAESICKQLSVYLRQP
LASRPEALAAALYTAFADQTARLTSRGTYVHERPDDDDNPVVVQTAAVASEQRCRLQRTP
LRLHPSSCVHGREWAPPRLLFYELLIAKQPFMRCVCALTASDCMPQQSASVSQQPQSRAA
TAHAPLSPQAPQRSSSERRARWSGAALEAVPTRSAVEARSVRKRSRWDKVN
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgtgggctggggcttgcgcacaggactctgcagtcgagctcgagaacgatagcggggtt
tcgccggacgctgctggacctgcgttgtgcgcgctgctggagcgtcacccggtggtcatt
cttgtcgcagaaaccggcactggcaagtctaccaaggttcccgcgttcttatggaagcag
ggcggtttcaactggatcgcttgcacacaaccgaggcggcttgcggcgatggcgctagcc
tctcgcgtcgctacagaattgggcgtcaaactaggatgtgaggtcggttatagcgtgcgc
ttcgctgatcagacgacaccgggcctaacgcacatcaagtacgtcactgacggttggatg
ctccgagcgttcgtgcgagatccactggcctccgcatacgatctcgtcatggtggatgat
gcccatgagcggagtctcgccacagatctactgctggccctatttcgccgcctcctatgg
cagcaggatgccacagcaaaccccacttcgaacaacccgagaaagttaccgcgactcgtg
gtgtcgtcggcaacgctcaatgcggatcagttttctgcgttcttcggcggggcaccggtg
ctgcgtatcgtgggtcgtaggtatccagtccgcatcgcgtatgcgatcagtatgcctgag
gattacgtactcgctgccgtatcccaggtcatgcaggtctttggggaatggtgcgagagc
aagcacaaccagcgggatcgtatcgtcgacggaatggatgtgttggtgttcctcaccggc
caggaggagatcgaacgagccgcacaattgatgaagcaccaggcgcagcagacgttggct
tgctccccggcgacaacgatgacgacgacgtcgaaaattcatcgatctggtggagcttca
gacgcctccgcaacgaacaaaagctcctgcagcgatgaagggacatcaatgaagcaacca
gggctcggtgtcgactctctgaaccgcgcagcgacgcagccgcgagtgcttaccgtcgcc
ttgtacggggcgctgccctccagtgagcaggtcagaatatgctgtgaaagacctccaccg
gggacgctgcgagttatcctggctacgaacgtcgcggaaacttcgctaacgttacccaac
gttagagtcgtcatcgactctggttacgttaagcagcgtatctatgatcacctggaggtc
gttccagcgtcgcaggcggcagcagagcaacgcgccgggcgagccgggcgaagctcgcct
ggggtatgctatcggttatacaccagggagttttacagtgagcaaatggcgccggagttg
attccggaaatcaaacgggtggatctatcagacgcatttcttttattgaagcggatgggc
atcgatcgtctcgacgagattgtctggttggatccaccggataccgcgaacgtccggcgc
agcttgcggctcctgcgacgcctcggtgccctgaccacagttgctgaagcagaaacagaa
gcagcagcggagcgtacgggctcacaagacacggaaaacagcgccgtagccccgcccgca
gcgctgtcggagcgtaagctccagagctgctcaagcgcccgcgaggtgctctcagtacca
ctcggacaacgcatggcggacatgcccctagaagcgcggctcgctagggcgctcctagct
gcagaggagctcggctgcaccagagagctcctgagtgccgttgcgattctgtcgacaggc
tacccgctgctcaccagacggggtcttgctgaagcagttccccgtttttgtcgaacgaaa
ccgaatcaactacgagaccctctggcatataacgactttctcttgtttgcacgagttttt
gatgcctggaaagcagcctcggacgcaacgctttggtgctatcgcctcggcatctccgaa
cgtgtgctgcgtcttgcggagagcatttgcaaacagctctccgtctacctgcggcagccg
ttggcatcccgcccggaggcgctagctgcagcactatataccgcttttgcggaccaaact
gccagactcaccagccgtggtacctacgttcacgagcgtcctgacgacgatgacaacccc
gttgtcgtgcagacagcagctgtcgcttcagagcaacgctgccgactccagcggacaccg
ctgcggctgcacccgtcaagctgtgtacatgggcgggagtgggcaccaccacgtctcttg
ttctatgaactcctcatcgcaaaacaaccgttcatgcgttgcgtttgtgccctgacggcg
tcagactgtatgccccagcagagtgcttcggtatcacagcagccacaaagtcgagcagcg
actgcacatgctccgctgtcgccgcaagcgccacagcgttcgtcgtcggagcggcgagct
cgctggagcggagcggctctcgaagctgtaccaaccaggtcagcggtggaggcgcgatcc
gtacgaaaacgctcacgttgggataaagtgaactaa
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