Cyanidioschyzon merolae: CYME_CMR160C
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Entry
CYME_CMR160C CDS
T00175
Name
(RefSeq) similar to polyadenylation factor I complex subunit FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CYME_CMR160C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CMR160C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CYME_CMR160C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
16996845
NCBI-ProteinID:
XP_005538446
UniProt:
M1V6R2
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Position
18:397253..398494
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AA seq
413 aa
AA seq
DB search
MSQQQSRGKQPNAPSATATTADNDDEVDLYSGIEFPQALAPAKQKVQPLRAAPSKGSSAS
ERDRVEAHAPSDKRGADRLEQAERNANETSRVRAAPDPSISDDLHDSDEEDDAEEEDQES
SDDDVDIILGSSQPAIGEQAAKFAASWNEVAKEGRGVAEQGGTAAGLGMMNAEASLQSSA
LLQSMLPQPTMANVVPGKQRSLYEVELEQLDEKPWREPGAVLSDYFNYGFTEETWKIYCQ
HQAAMRQETSVLHRQVTMNQATASRERDKPTRPGQAGAGSAAISAGNARERPPRRAVEEE
KPKRDVESTAKSTGKGPGTAWKVAGSSPSLLPSKNVLERLAQVRQQIMSQNTGAQTPESS
SKTMHRHETTSSEANSGEADRAEPTQATASDDRTRKRKRVNEEPAPSIADRSR
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcagcagtctcgcggtaaacaaccgaacgcgccaagcgctaccgcgacgacg
gctgataacgatgacgaagtcgacctttactcgggaatcgagttcccgcaagcgctcgcc
ccagcgaaacagaaggtgcagcctctccgagccgctccgtcgaaaggtagcagcgcttca
gagcgtgacagagtcgaagcgcatgcaccttcggacaagcgtggtgctgaccgactcgaa
caggcagagcgcaacgcgaacgagacctccagagttcgtgcagcgcccgaccctagcatc
agcgatgatctccacgactcagacgaagaggacgacgccgaagaagaggatcaagaatca
tcggacgacgacgtggatatcattttgggcagttcgcaacccgcgattggcgagcaggca
gccaagtttgctgcatcatggaatgaagtcgcgaaggaagggcgtggtgttgccgagcag
ggcggcactgccgcaggtctcggcatgatgaacgccgaggcctcgcttcaatcgtcagcg
ttgcttcagagcatgttgccacaaccaaccatggcaaatgttgttcccggcaaacagaga
agtctctacgaagttgagctagagcagttggatgaaaagccctggcgggagcccggcgct
gtactctctgactactttaattacgggtttacagaggagacctggaaaatatattgtcaa
caccaggctgcaatgcgccaggagacaagcgtcctgcaccgtcaggttacaatgaaccag
gcgacggcatcacgggaacgcgacaagccgacgcgtcccggccaggctggtgccggctct
gcagcgataagcgcggggaacgctcgcgaaaggccaccgcgacgagcggtggaagaggaa
aagcccaaacgagacgtcgagtctaccgccaagagcaccgggaaaggtcctgggactgcg
tggaaggtggctggttcgagtccatccctgctgccgagtaagaacgtcttggagcgtctc
gctcaggtgcgccaacaaatcatgagccagaacaccggagcccagactccagaatccagt
tcaaaaacgatgcaccgtcatgaaacaaccagctctgaggcaaactccggagaagcagat
cgcgctgagccgactcaagccacggcatccgatgatcgcactcgaaagcggaaacgggtg
aatgaggaaccagcaccgagcatcgcggacaggtcccgctga
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