Cyanidioschyzon merolae: CYME_CMR433C
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Entry
CYME_CMR433C CDS
T00175
Name
(RefSeq) probable DEAD/DEAH box RNA helicase
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CYME_CMR433C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cme03041
]
CYME_CMR433C
Enzymes [BR:
cme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CYME_CMR433C
Spliceosome [BR:
cme03041
]
Complex A
U2 snRNP components
U2 related factors
CYME_CMR433C
Complex B
CYME_CMR433C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
16997000
NCBI-ProteinID:
XP_005538647
UniProt:
M1UWJ3
LinkDB
All DBs
Position
18:complement(1067439..1070522)
Genome browser
AA seq
1027 aa
AA seq
DB search
MEQLGTATDSLDAFMATLSGPVAGNRHECLSFSVPYSRNGSACELDPVAQSHDIQQQPRR
SPCPKAEPGSPTKTGLVSDGHEIEHLCASEKNGLHRSAGSWPSAAEPSFSGTGNGTPGTS
PRHEPAKRQRHWGAASRTAHLADRTRQVQALQPRSEPCLSSLPASSRPDNADTVSVPASS
DTEDNDAASGSMQVEGVTADRRHRTVSEAPGVLVRDLEQPHRLLGVSLLHNWEQTGLPTT
ILDWLKDGLGMGHPTLVQRACIPVLVRGHHCVGVAETGSGKTLAYLVPLVRYLIRSWRDR
GRRRTCPVAVVITPTRELAMQVHKLLVTLLQHLSWPSCSALEPERYAADASFRASVADPD
IAVPAMPESWCLCAYGGADLAANVATLCRGVRVLIGTPGRLISLLQLNRGRFLHLRGTAL
LVLDEVDRLLDLGFAPQIQRILAATSTQVQMAFFSATLPPIMEKLIRKLISQQRQAAIAS
DGSHHQRYRARRRLVLIRCTTRPLTMPQSPGSAYEPGIPLTIQQRVHVLPETDPPQAVEQ
GEAARFAALLDLLDRHTTARMLVFVSRQEQVDLLFQRLVEWHRQEKQQASKRAPALRRAA
NEAIEHMLALHGGIDQGDRDDTWDLFRHPLKRSADAGSHASCRLLLATSLAARGLDVPDL
DVVVNFHAPRSLEDYVHRVGRTGRANRLGVAYTLFVPHQDDFAAPFLVQCLEAAGQEVPS
ALATARERWMGTKRPRFARQGAQMPMIECGATRSHVAAPAATRRTIEKSRETRSVSGDVA
SYPPMSPVEASRPATRHVGRSPKTDDPPAASFDGDGARTVSHASSSMHGCGYSTGLASAA
PQQQQQQQQQQSIPSASGHRCRRVEWRPPEYRGRGFTFDTRDLERLRRRLVPAATTDSIL
LGAGADSSLVEQHQLDACSAKDAVLWADECTAILVINGYPGTVRQRVTSSAFLRHIFEKH
GCRVLVKGAYQRNLPERRSRATFHAMPEIQRPLYLWFEAPTTAALQGALQHAQHELASDK
SIEETMF
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atggagcaactgggaactgctacggactcactggacgcgttcatggccacgctcagtgga
ccagttgctgggaacaggcacgagtgtttgagtttttctgtcccgtattcgcgaaacggt
agcgcttgcgaactggaccctgttgcccaaagccacgacatccagcaacaaccacgtcgt
tctccgtgtccaaaggcggagccaggatccccaacgaaaaccggtttggtctccgacggg
catgaaatcgagcacctgtgcgcttcagagaagaacgggcttcaccggagtgctggaagc
tggccctcggccgctgagccgtcattctctggaacggggaacggcacaccggggacctcg
cctcgacacgagcccgccaaacgacaacgccattggggcgctgcttcccgaaccgcacac
cttgccgatcgcactcgacaagtgcaagcactccagcctcgctcggaaccgtgcttgagc
tcactgccggctagcagtcgtccagacaacgccgataccgtttccgtaccagcgtcctcg
gataccgaagataacgatgccgcttctggcagtatgcaggtcgagggcgttaccgcagat
cgtcgtcatcgaacggtatccgaagcgccgggtgttctcgttcgcgacctcgaacagccg
catcgtctgctcggcgtatcgctattgcacaactgggaacagaccggactccctaccacg
atccttgactggttgaaagacggtctgggcatggggcaccccacgctggtgcaacgtgct
tgcattccggtgctggtgcgtggtcaccattgtgtgggcgtcgccgaaaccggctccggt
aagacgctggcgtacctggtgccgcttgtgcggtacctcattcgctcatggcgtgataga
ggacgccgacgaacgtgtccggttgcggtcgtcatcacaccaacccgtgaactagccatg
caggtacacaagttgctggtgacgctgctgcagcacctcagttggccatcgtgcagtgcg
ctggaacccgagcgatacgctgctgatgctagttttcgtgctagcgttgctgaccctgat
atcgcggtgcctgcgatgcccgagtcttggtgtttatgtgcctacggcggtgcagacttg
gcggccaatgtggcgacgctctgccgcggcgttcgggtcctcatcggaacacccgggcgc
ttgatatcccttctccagttgaaccgagggagattcctgcatctacgtggtacggcgctt
ctggttttggatgaggtcgacaggcttctggatctgggattcgcgccacagatccaacgc
attctcgctgcgacttcaacgcaggtccaaatggcgttcttctcggcaacattgccgcca
attatggaaaagctcattcgcaaactcatatcgcagcagagacaggcagcgatcgccagt
gatggatcgcatcatcagcgctatcgggcacgtcgtcgactggtgcttatccggtgtacg
acacggccgttaaccatgccgcagtcgccaggatcagcgtatgaaccgggcattccgtta
accattcaacaacgtgtacacgtgttaccggaaacggacccaccgcaagcggtggagcag
ggtgaagcggctcggtttgcggcgctattggatcttctggacaggcatacaacagctcga
atgctggtgttcgtttcccgtcaagaacaggtggacctgctctttcaacgactcgtagaa
tggcatcgacaggagaagcagcaggcgtcgaagcgtgctccggcgttgcgacgcgccgca
aacgaggcaatagagcacatgttggcgctccatggtggtattgatcaaggcgatcgcgac
gacacctgggatctctttcgacatccactgaaacgatcggcggacgcaggctcacacgca
agttgtcgtttgctcctggcgacatcgttggctgcccgtggcctcgacgttccagacctg
gatgtggtcgtcaatttccacgctcctcgatcactcgaggactacgtgcatcgtgttgga
cggacaggtcgagcaaatcgtctcggggtagcgtatacgcttttcgtgccgcatcaggat
gattttgcggcgccgttcctggtccagtgtctggaagcagcgggtcaagaggtgccgtct
gcgttggcgacggcccgggaacgttggatgggtaccaagcggccccgcttcgcccggcaa
ggagcacagatgcctatgatcgaatgcggcgcgactcgttcacatgtcgctgcgccggct
gcaacccgaagaacgatcgagaaatcgagggaaaccaggagcgtctctggagacgtggca
agttatccgccaatgtcgccagttgaagcgagtcgccctgcaacgcggcatgtggggcga
tccccgaagaccgatgacccaccagctgcatcattcgacggtgacggtgcccggacggtt
tcgcatgcctcgagcagcatgcacggttgtggttattcgacgggactagcttcagcggca
cctcagcaacagcaacaacaacaacaacaacagtcgattccgagtgcctcggggcatcgc
tgtcgacgggtggagtggcgtccaccagagtaccgaggccgcggcttcactttcgacacg
cgtgatctggagcgccttcggcgtcgtctcgtgccggcagcgactacggatagcattcta
ctcggtgctggggcggattcatctctggtggagcagcaccagctcgacgcgtgcagcgcc
aaagacgcggtattatgggcggacgaatgtaccgctatccttgtgatcaatggttatcca
ggaacagttcgccaacgcgtgaccagctcagcgtttctgcgacatattttcgagaaacac
ggttgtcgggtgttggtcaagggtgcgtatcagcgcaacctgccagagcgacgctctcga
gcaacgtttcacgcgatgcccgagatccaaaggcctttgtacctgtggtttgaggcaccg
acaacagctgcgttgcagggtgcactgcaacacgcgcagcatgagctcgcctcggataaa
tcgatcgaagagacgatgttctag
DBGET
integrated database retrieval system
