Cyanidioschyzon merolae: CYME_CMS114C
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Entry
CYME_CMS114C CDS
T00175
Name
(RefSeq) RNA polymerase I second largest subunit
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CYME_CMS114C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cme03021
]
CYME_CMS114C
Enzymes [BR:
cme01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CYME_CMS114C
Transcription machinery [BR:
cme03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
CYME_CMS114C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
16997576
NCBI-ProteinID:
XP_005538782
UniProt:
M1UWS4
LinkDB
All DBs
Position
19:288858..292385
Genome browser
AA seq
1175 aa
AA seq
DB search
MTHAQQTTGTVLSESETRHLTETLLQILEPHLQSFNSAITQGLQQVLHDIEPLILEGTVQ
QAADHVSKERLEVWFEDLRLQKPRLPRARALQSTGNLRARGFADELELGLDPSAILPHQC
RALQSSYTGSLSVVLCWRATRISHGCYRKDSTLCNTALWTNGSYAEDVYRSERHLGEVPI
LVGSKLCHLDGLSPNERVALHEEEYDYGGYFIVNGVEKLLRMVIMPRANHVMVIARDANV
RRGEHFTRFSAMIRCRRADRVRVVTNHLHYLQTGLLRLRFSVKRQEYLLPLGLVLKALYD
LADRELFLLLTMPSGCCGTNADENLRYIRERALMTVRELHVLTGGEGTQHAALSYLGARF
RCLFPEYLSSDDSDERCGAFILRRYVLIHLDDPLQKLELLAYMSRKLLHYMTGCLAEDDP
DSLANQELLLPGQLWLLFLQEKLQDALFALRDEISRQLTQRANQGSLLDPDFVRKCVSKP
RSGIRVGERMLHLLSTGTASLRDGAELLQTSGYSIIADRINFQRFLSHFYSVHRGQYFLN
LRTSESRKLKPETWGFICPVHTPDGAPCGILNHLTRMCRVVADQQQVLQEQKRIEWILET
LPLEHPLAHNDALLMPPANARPVLVDGRIRGYVHGDVPLGKLLRQQKLEHFPQTEIVDVE
IPRLFPSVMVFSTPSRLMRSVWNMPQAGIEWIGTMEQLFMPVDLCKSQSMSRAGNAAIHR
ELSATNIFSLLASFIPFSNMNQSPRNIYQCQMGKQAMGVPFHDWDRRFDTKSYRLLTPQQ
PLVQNRSEAQAGWSKVFGSSFNAVVAVISYTGYDMEDGMVINRASLDRGLAHGAIYGCEF
VDLDQLNVAKDARFSRLPAVGERMTPGSVLYSIQGRRPHLYRNSETSYVDAVLLAENQRR
VAIRTRTPRRPVIGDKFASRHGQKGVLSAIWPAEDMPYTSDGIVPDILFNPNGFPSRMTI
GMIVESIAGKAAAVHGAVPIDASAFERETEDASDRSNEPPHDFFGRLLLNTGYTYHGTET
MYNGYTGEPFVVQIFIGVIAWQRLRHHIADKFQVRTEGIVHQTLRQPLRGRKRGGAIRLG
EMERDALLASGAAYTLQDRLQSCSDLHTVYVSALDGSLLAPIAAPNERLGATSRISVKSR
TNTRSPVVRVHMPYAFKYLVYELAAMNIRVSLPVK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgacgcacgctcaacaaaccactggtaccgttctatccgagtcggaaacccgacacctg
acagaaacgcttcttcagattctggagccgcatcttcaatccttcaacagtgcaataacg
cagggcctgcagcaggtgctccacgatatcgagccacttatccttgaaggaaccgttcag
caagcagctgaccacgtgtccaaggaacgacttgaggtctggtttgaagacctccgcctt
caaaagccgcgtctgcccagggctcgcgcgttgcagtctacaggcaacctcagagcgcgc
ggctttgcagatgaactcgaactgggtctagatccttcagcgatactcccgcaccagtgt
cgcgccctgcagtcgtcgtatacaggctcgctaagcgtcgttctctgctggcgagcgacg
cgcatctcgcacggctgttaccggaaagacagcacgctatgtaatacagcgctctggaca
aacggctcctacgcggaagatgtttatcgcagcgaacggcatctgggcgaggttcccata
ctagtgggatccaagttgtgccacttagacggactgagtccaaacgagcgcgttgcactt
cacgaagaggagtacgattacggtggctacttcatcgtgaatggtgtcgaaaagctgctg
cgaatggtgattatgccgcgagccaaccatgtgatggtcatagcgcgtgatgcaaacgtc
cgacgtggagagcacttcactcgcttcagtgcaatgattcgctgtcgacgcgctgaccga
gttcgagttgttaccaatcatctccactaccttcaaactggtcttcttaggcttcgattt
tccgtcaaacgccaagaatacttgctaccgttagggcttgtgctgaaagccctttacgat
ctggctgatcgggagctatttttgctgctcacaatgccaagtggatgctgcggaactaac
gcagatgaaaacctccgctatatccgcgagcgagcgctcatgacggttcgtgagctgcat
gtactaactggtggtgagggtacccagcacgcagcgctgtcttacttgggtgctcgtttc
cgttgcctgtttccagagtacctgtcttctgacgattccgatgagcgctgtggcgcgttt
attttgcgtcgatatgtgctcattcacctcgacgatccacttcaaaaactagagctcctc
gcctatatgtcgcggaagcttttgcattatatgactggctgtctcgcagaggacgatcca
gattcgctagcgaaccaggagctcctcttgcccggacagctttggctgcttttcctccag
gagaagctccaagacgccctgttcgcgctacgggatgaaatttcccggcagttgactcag
cgagccaatcagggaagcttactagacccagattttgtccgcaaatgtgtaagcaaacct
cgcagtggtatcagagtaggcgaaaggatgttgcacctgctatccacgggaacagcgtcc
ctgcgggatggtgcagagttgctacagacgtcgggttacagcatcatagcggatcggatc
aacttccaacgcttcctttcccacttctacagcgtccatcgagggcagtactttttgaat
ctgcgcacgtcggagtctcgcaaactcaagccggagacttggggcttcatctgtccggtg
cacacacccgatggagcaccctgtggaattctcaatcatctcacgcgaatgtgccgcgtc
gtcgcggatcaacaacaggtactgcaggagcagaagcgaatcgaatggatcttggagacg
ctgccactggagcatcctctcgctcacaacgatgcactgcttatgccaccggcgaatgca
agaccagtactggtggatggtcggattcgaggctatgtgcatggagatgtaccgctgggg
aagcttttgcgtcagcaaaaactcgagcatttcccccaaacagaaattgtggatgtggag
atcccgcgtctcttcccgagcgtcatggtgttctcgacaccgtcacggctcatgcgctca
gtgtggaatatgccgcaagctggcatagaatggataggcaccatggagcaacttttcatg
cccgttgacctgtgcaagtcgcagtcgatgtctcgtgctggaaacgcagccattcatcgt
gagctgagcgcaacgaacattttcagtctactggcctcgtttattcccttcagcaacatg
aatcaatcaccgcgaaatatctaccagtgccagatgggcaaacaagccatgggcgttccc
tttcacgattgggatcggaggttcgacaccaagtcctaccgattactgacgccccagcaa
cctttggtgcagaatcgctctgaggcccaagccggttggtccaaggtcttcggatcgagc
ttcaatgcagtagtcgctgtgatctcatacactggttacgatatggaggacggtatggtg
atcaaccgagcgagtctggataggggtctcgcccacggagcgatctacggctgcgaattc
gtggatctggatcagctcaatgtcgcaaaggatgcccggttcagccgactgccagctgta
ggcgagcgcatgacacccggctcggtgctctatagtattcagggccggagacctcatctt
tatcggaatagtgagacgagttatgtcgacgctgtgctcctcgccgagaatcaacggcgc
gttgctatccggacccggacgcctcggcgacccgtcatcggggacaagtttgcctctcga
catggccagaaaggggtgctgtctgcaatctggcccgctgaggatatgccgtacacgagc
gacgggatcgttccggatattctcttcaatccgaatggctttccgtcgcggatgaccatc
ggtatgattgtggagtctatcgcagggaaagctgcagccgttcacggcgctgtgccaatt
gacgcgagtgcttttgaacgagaaacggaggacgcaagtgatcgcagtaacgagccaccg
cacgacttctttggaagattgttgcttaataccggatacacgtaccacggaacagaaacg
atgtacaacggttacacgggcgagccgtttgttgtccaaatattcatcggcgtgattgcc
tggcagcgacttcgtcaccatattgcagacaagtttcaggtgcgaactgagggtattgtt
caccagacactccgacaaccgctgcgaggccgaaagcgaggtggcgctattcggctcggt
gagatggagcgtgatgcgttgcttgccagtggggctgcctacaccctccaggatcggtta
cagagctgttcagacttgcacactgtatacgttagcgctctcgacggatcgctactcgca
cccatcgcagctccgaacgaacgtctgggggctacctcgcggatctcggtcaagtcccgg
acgaacacccgctccccagtcgttcgcgtgcacatgccgtacgctttcaagtatcttgtt
tacgaactagcagcgatgaatattagggtatcgcttcccgttaagtga
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