Cyanidioschyzon merolae: CYME_CMS124C
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Entry
CYME_CMS124C CDS
T00175
Name
(RefSeq) valosin-containing protein
KO
K14571
ribosome biogenesis ATPase
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CYME_CMS124C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cme03009
]
CYME_CMS124C
Ribosome biogenesis [BR:
cme03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
CYME_CMS124C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
AAA_16
RuvB_N
AAA_33
AAA_22
AAA_14
AAA_5
TIP49
NPHP3_N
nSTAND3
RNA_helicase
AAA_28
AAA_18
AAA_2
ABC_tran
AAA_17
Mg_chelatase
Rad17
Cytidylate_kin2
AAA_25
NACHT
IstB_IS21
AAA_3
TsaE
NB-ARC
Parvo_NS1
ATPase_2
nSTAND_NTPase5
Sigma54_activat
Viral_helicase1
Vps4_C
AAA_24
AAA_lid_PRS2_C
DUF815
LonB_AAA-LID
Motif
Other DBs
NCBI-GeneID:
16997559
NCBI-ProteinID:
XP_005538791
UniProt:
M1V744
LinkDB
All DBs
Position
19:318901..321063
Genome browser
AA seq
720 aa
AA seq
DB search
MPSQTLRHWSGRADSPEFLSFVRQLVEDQGEVEKTSLDQLVTEISKVFVGFSRLPTRAKF
QAAAKALTLVQSVEQNVNTEVYRAAGCARLPSKVGSRIPDGNHFVTSVQESSRETTASVK
RHRQVDPNMPHTPPRAPLSRSSFLTARPKQRYEDIGGIESILSHIRELVEWPLRYTELYK
HLGVDPPRGVLLHGPPGCGKTLLANAIAGELGVPFLRLSAPELIAGISGESEQRVRSLFD
EAKSLAPSLIFIDEIDAVTSRRETSSREMQNRVIAQLLSCLDSISLQETGDRLVIVIGAT
NRAEALDPALRRAGRFDREIEIGAPDEEAREKILRNVTRRMLLSEDFNFRTIARRTAGYV
GADLAALATEAASTAIRRIGNDLLPTDTTVNGAASVDFANISMLRITIDDFLVAIGKVQP
SALREGFATVPDVSWEDIGALDDIREELEMAVIEPLREPEKFARFGIGISAGVLLYGPPG
CGKTLLAKAVANESGANFISVKGPELLDKYVGESERAVRRLFQRARSSAPCVIFFDELDA
LAPRRAFGSFGASASADNDAGGSNASERLVNQLLTELDGMNPRRQVFVIAATNRPDLIDA
AMLRPGRFDKLLYVPLPDETGRHAILQTGLRGMPLDSRVDLRAVSGATKGFSGADIAALI
REAAVRALRSEAPAIGAEHFRKALENIFPSVSPGDAARYDSMRQNLRRARGHVNENIFTI
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgcaaactttaaggcactggagcgggcgtgccgacagtccagagtttttgagt
tttgtcagacaattggtagaagatcaaggcgaagttgagaaaacaagtttagatcagctc
gtaaccgagatttccaaggtctttgttggtttctcacgtctgcctacccgggcaaagttc
caggcagccgcgaaagctcttacgctcgtgcaaagtgtcgaacagaacgtgaacacggag
gtttatcgtgccgcaggttgcgctcgcctaccttccaaagttggatcgcggatccctgat
ggtaaccacttcgtcacttccgttcaggagagttcccgtgagacgacagcatcagtaaaa
aggcaccgacaagtagaccccaacatgccccatacgccgccgagggcgcccttaagtcgg
agttcttttttaactgcccgcccgaaacaacgatatgaagacatcggaggtatcgaaagc
atactgagtcatattcgtgagcttgtagaatggccgcttcggtacacagagctctacaaa
catctcggagttgatccacctcgaggtgtgctgcttcacgggccccctggctgcggtaaa
actctccttgccaatgcaattgccggcgagctcggtgttccgttcttgcgattgtcggcg
ccagaacttattgcgggaatctcgggagaatcagagcaacgtgtccgttccttatttgac
gaggcgaagtcgttggcgccttcacttatctttattgatgaaatcgatgcagtcacatca
agaagagagacttccagcagagagatgcaaaatcgtgttatcgcccagcttctttcgtgt
ttggattctatatctttgcaggagactggcgaccggttggtgatcgttatcggcgcaaca
aacagagctgaagcactagaccccgctcttcgacgcgcaggacgatttgaccgagaaatt
gaaataggggcccctgatgaggaagcacgtgaaaaaatactgcggaatgtaaccaggaga
atgcttctctccgaagatttcaacttcagaacgattgcgcgccgtaccgccggatacgtg
ggtgcggacctcgcagcactggccacagaagcggcgtcgacggcgataagacgtatcgga
aatgacctattgccgactgataccacagtgaacggcgccgcctccgtggattttgccaat
ataagcatgttgcgtataacaatcgatgatttccttgttgccatcggaaaagttcagccc
tcggcgttgcgtgagggattcgccaccgtgccagacgtttcctgggaggatataggagct
ctggatgacatcagagaggagctcgagatggctgtgattgagccgcttcgagaaccggaa
aagttcgcgaggttcggaatcggaatctctgctggtgtgcttctgtatggcccgcctggg
tgcgggaaaactttgttagccaaagcagttgcaaatgaaagcggcgccaactttatctcc
gtcaaaggtccggagcttctcgacaagtacgtcggtgagagtgagcgcgccgtccgtcga
ctttttcagcgagcccgctccagcgcaccatgcgtgatctttttcgacgaattggatgca
ctcgcgccgcgaagagcattcggtagcttcggtgcttcagcgagcgccgataacgatgcc
gggggaagcaacgctagtgaaaggctagtgaaccagctactcacggagctagacggcatg
aatccccgccgacaagttttcgtcattgcggcaacgaatcggccggacttaatcgacgcg
gcgatgctccgacctggacgtttcgacaaacttctttacgttccactgccagacgaaact
ggaagacatgcgatcctgcaaactggccttcggggaatgcccctggactcccgcgtggac
ctgagagcggtttctggtgcaacgaaaggattctccggcgcagacattgctgcactcatt
cgagaagcggctgtacgtgcactgcgttctgaggcgccggcgatcggcgctgagcatttt
cgcaaggctctcgaaaatatatttccgtcagtgagtcccggagacgccgcccgttacgat
tctatgaggcaaaatttacgcagagcaagagggcacgtgaacgaaaatattttcacgata
tga
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