Cyanidioschyzon merolae: CYME_CMS248C
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Entry
CYME_CMS248C CDS
T00175
Name
(RefSeq) DEAD/H box protein
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
cme
Cyanidioschyzon merolae
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cme03041
]
CYME_CMS248C
03016 Transfer RNA biogenesis [BR:
cme03016
]
CYME_CMS248C
Enzymes [BR:
cme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CYME_CMS248C
Spliceosome [BR:
cme03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
CYME_CMS248C
Transfer RNA biogenesis [BR:
cme03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CYME_CMS248C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
16997173
NCBI-ProteinID:
XP_005538886
UniProt:
M1V789
LinkDB
All DBs
Position
19:636355..638634
Genome browser
AA seq
759 aa
AA seq
DB search
MAAAFAELGLMPELIQAIDDMGWVFPTPVQSEAIPLILGGGDVCVAAPTGSGKTGAFCLP
TLQIVHETLNYTSAADQSRSGASSNPDRWKMSALDRAPHLILDASGLLCASTELHQWSGG
RAAFGMLPSARGKWYYEVQVLGDGLCRVGWSAACSTLALGEDDLSYGFGGTAKKSHCGKF
ESYGGAFGKNDVVGVALDWENGEIWFSKNGEPLGRAFSINRKTLGDRALYPHVYLKNSQV
RVIFSDTSYLPGAGFREVGSAGPQERTTPEREGAVDLQGTHRPSNAPLMLILEPTRELAL
QVHQELHRFSRFLDEDQTSSSEKVQCVLFTGGSASQNEALGAPQSRIDIATCTPGRLFDA
IRTKQLDVRAVRFLALDEVDGLLTMGCGSQIMQLLGMIPRQGRRHRLQIIMFSATVNAPR
VRQLSDRIQEHATWVDVRGPETVPSTVDHLVVRIDPGTALQLVQEEEGIAPAPAASLPAT
DAVHVGVDYRDAETASLSQRIKLAKPILCLRLLEVFQMDQVMIFCRTQLDCDLLQQFLEQ
HAAIRGATATLHAGLADQQRRQHFTAFKEGQVRILICTDVAARGIDISGLPFLISMTLPD
EVENYLHRIGRVGRADRLGLAISLVSTVPERVWFHSSCRKRAKGKCQNRALTTEGGCTIW
YDESEILRRLEAQLGEANMPEILDVNQVLQAKDPAALQAYVRGLAQYGRKRGEIGAACVN
AVDPELEQRLHHTQQVARRVQELEKNVQWRFLRRLQNAR
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgcttttgctgaactcgggctcatgcccgagctcattcaagctatcgacgat
atgggttgggttttcccgacacctgttcaatcggaggcgattccgctgatcctcggcggt
ggtgatgtttgcgtcgccgctccgaccggctccggaaagacgggcgctttctgtttgcca
acgctccagatcgttcacgagacactaaactatacttcagctgccgatcaatcgcgatcg
ggagcctcctcgaaccctgacagatggaagatgagcgcgcttgatcgcgcaccgcacctg
atcctggacgcgagcggcttgctgtgcgcttccacagagctccaccaatggagtggcggt
cgggcggcctttggcatgctaccatcggcacggggcaaatggtactatgaagtgcaggtc
cttggtgatggactttgtcgggtcggttggagcgctgcttgttcgacgcttgcgctcggc
gaggacgacttgtcgtacggattcgggggcactgccaagaagtctcattgcggaaaattc
gagtcctacgggggggcattcggaaagaacgatgttgtcggtgtggcactcgactgggaa
aacggtgagatttggttctcaaaaaatggtgagccgctcggtcgtgcgttcagcattaac
cgcaaaactctgggcgatcgtgcactatacccgcatgtttacttgaagaacagtcaagtg
cgcgtcatcttcagcgacacgagctatttgcctggagctggcttccgagaagtcggctcc
gcaggtccacaagaacgaacgacgcctgaacgagaaggcgctgttgacttgcaaggcacg
caccgaccctcgaatgcaccgttgatgctgatcctggagccaacgcgagagctggcactc
caagtgcatcaggagctgcaccgctttagccgcttcctcgacgaggaccagacgtcgtca
tcagagaaagtacagtgcgtcttgttcacaggcggctccgcgagccaaaacgaggcactc
ggcgctccccagtcgcgaatcgatattgcaacctgtacaccggggcgcctgtttgatgcg
atacgtaccaaacaactagatgtacgggcagtgcgctttcttgcccttgatgaggtagac
gggttgttgacaatgggatgcggttcccagattatgcagttgctgggcatgattcctcgt
cagggtcggcggcatcggctccagatcatcatgttttcggcgaccgtgaacgcaccacgg
gtccgtcagctcagtgatcgaatccaggagcacgccacctgggtcgatgtacgcggccca
gagaccgttccatccacggtggatcacctggtggtgcgtatcgacccggggactgccctc
cagctggtacaggaggaggaggggatagcaccagcaccagcagcatcgcttccagccacg
gatgcggttcatgttggtgtggactatcgcgatgcggaaacggcctcattatcgcagagg
atcaaacttgcgaaacctattctatgcctgcgacttttagaggtcttccagatggaccag
gtgatgatcttctgtcgcacgcaactcgactgtgacttgctgcagcagttcctggagcag
cacgcagcgatccgaggagcgactgcaacgctgcatgctggactcgctgaccagcaacgg
cggcagcatttcactgcattcaaagaaggccaagtgcgcatcctgatctgcacggacgtt
gccgcccgaggtattgatatcagcggtttaccgttcctcattagtatgacgctacccgat
gaggttgaaaactacctgcatcgcattggacgcgtcggtcgcgcggatcgtctaggtctc
gcgatatcgctcgtgagtactgtccctgaacgcgtctggtttcacagctcgtgccgcaaa
cgcgccaagggcaaatgccagaaccgagccttgaccactgagggcggctgcacgatctgg
tacgatgagtcggaaatcctccgacgcctcgaggcccaactcggggaagcgaacatgccc
gaaatcctggacgtgaaccaggtattgcaggcgaaggatccggcagcgttacaggcgtat
gtacgcggccttgcccagtacggtaggaagcgcggagaaatcggagccgcctgtgtcaac
gctgtagatccagagctagaacaacggcttcaccatacgcaacaagtggccagacgagtg
caggaactagagaaaaacgttcagtggcgtttcctccgacggctgcagaacgctcgctag
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