Cyanidioschyzon merolae: CYME_CMS297C
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Entry
CYME_CMS297C CDS
T00175
Name
(RefSeq) similar to cleavage and polyadenylation specificity factor subunit
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CYME_CMS297C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cme03021
]
CYME_CMS297C
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CMS297C
Transcription machinery [BR:
cme03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CYME_CMS297C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CYME_CMS297C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
16997189
NCBI-ProteinID:
XP_005538924
UniProt:
M1VM14
LinkDB
All DBs
Position
19:complement(761600..767242)
Genome browser
AA seq
1880 aa
AA seq
DB search
MDLIHKSLIPASRAVAVASGRFAPELVHSGSPASESAEEATELEPLDLVVAHLNRLELYR
VDARGTLTLVAQTEVAARIGSISRFPSPVWISGQKQPVRKDWLLVAIDSGFSGGAVARSA
GQVSMIAMIVEFKPLLATWYAQAVYSFAQECVYVLQDDGIRDAALTIDKALEHVVLRAGA
VLGDGMWRRGGGYGEERPLTCVDAVEAAVDFLNESSRESNFQWNDGRCGALVVPAWRKAY
ILAPPLCSGTGAALAHCGIRDDVVNEGALDADPTAGRDAHTRTSYGPGAMLWTEDVQETP
VSERILPGIPAAETRGRKLLITERDQGIQDAHRVYYYAVELEALLGHVRILDCCFLTGTA
LPTMVMLYEERPTWAGRVEAVSNSCALAAIVLPPLPAGAAGEEPLVAWRIQGLPFDAEKV
VPLPSVEWDRAAEQGLLLIAANVLFWIRGNGQIGASLSGNHFGDTFMELDGCQLPGALYG
GTDSDIISRCRTSQVLHFRGACIAPVRLHRYGLFLADGNVYQLALHADAEYPLRLEALRV
RGESRLAPAPLDAKLLSRDLLFVAAHLGSSVLYRMTQVHPHGRRTRTSAAENGTLHKNAT
TKEAQWELQQRDTIFQLGPIVDLVVIPPRYSPPAGTLLDPGEILAATGHQHQSCLARCTY
QVQTREWQRIPSAGCRRVWSLYADHDGTGMHQEEQAFLLLSLSKSSVILDIRRGFEQAAD
TRVLLPSPTIAAGNLAQRRLIAQVHRTGIRLLDANLDVVYEEDMLLAALEPGTAVSGASV
VDPYIAVWFTNHRLQVWRLEHFSEAEAERTTYRLSLVFSREHVLCASLYDGVLCRDFQAA
CRPPRSTGNLRTSGRPMRLRRRGASAAPGSAATAAATQSSRETHRAVPPSALSRGQRALA
GADLPPELGAEETFLYGALALSDAVSDATPEGASNGTPETTARGSQPEEPVVPALHSMLA
VVSVDGALYLYALGSEKNLLLLRCKRFFLGVHQVLDDRSRQAASFTDAASAEADAEAESS
AATTTITTTPPTSPRGGTTGMLHRMPGEATLEVSALESGTRTTTPSQGAGLTSLSSSSSS
SMPRKRTATTGEDAPKGLGSMPANGRELGPRRTRQGKVLDVCLVDIGERTCPVLAAVLAS
GEVVLYRGYVVNRGILCFARVGSDALSTVLTPSVGVSANAPPMSLSTSIGTTAPERDSKA
SSRRSVSIRLMPFRRIQGKSGISIIGQRVILVLGDTGYPTIHPVRGPGLLALADLHHEGV
CSQGFVSVATDGTVRIGQWPVLARAQAVGNFLVQKHAWPQPEYVERLLHDPSTDTILAIV
GRMVPATEAAVKYLLEGNRYESMLRHARRKQQQQQEQQEQQQEPGLQEAEESAVRVTRSS
GMQPPQPLLLNADARRVPASRGDTAGIRARGDSSTAEPMDMDDVANGASAMTTPGGVNGT
AETPWPSTTARSVDESVAGDVADDPPKALAAFEEQKLRPFDSGRERDLPLLIDQHAVVLL
ARNSLEVLARYDLEQTEVGLAMCATRIRHFQRTGDDEAPRFTERDVLVVGTCFLRGEDTS
IRGRLLVFEISRQEGRQHHQHQRTLYQMQTLAATEVKGAVSAVAPVKGGFVCCSAGPRLE
VYKLIEDEMSCISFYPGINLFFSHVGTLKQYILASDMRYGVSFLFWRSRNVSQNFLCRDE
AQRELVASEWLMHGTKANVLSADMLGNIIELSIPSPVDPESAGGTRMTFEAGFHVGSRPN
AVRRVRIDDPSAETPPPNEPSSLWNTHVILLGTVDGMITMVSPLLRGVAKKLELAAQDLM
LEPELRKWCLYARSWRVMRSLTVAAGLRKPKRSILDGDVLQLYGSLDTPRRKEIARRIGM
PQEALFEAIFGTIDEVLQVF
NT seq
5643 nt
NT seq
+upstream
nt +downstream
nt
atggacctcatccacaaatcactaatacccgcgtcgcgtgccgtggcggtggcgagcggg
cgctttgcccccgagctcgtgcactcgggaagcccagcgtccgagtccgcggaagaggca
accgagctcgagccgcttgatctggtcgtagcgcacctgaaccggctggaactgtaccga
gtcgacgcacgcgggacactgaccctcgtggcacagacggaggtcgctgcgcgcatcggc
tccatcagtcgtttcccgtctccagtctggatttcgggccagaagcaaccagttcgcaag
gactggctcctagtcgctattgatagtggcttcagcggcggtgccgttgcgcgtagtgct
gggcaagtatccatgattgccatgatcgtcgagttcaaaccgctgcttgcgacctggtac
gcgcaagctgtctacagttttgcacaggagtgtgtctatgttctccaggatgacggcatt
cgtgatgccgccttgaccattgacaaggccctagagcatgtcgtcttgagggcgggcgca
gtcctcggtgacggcatgtggcgccgtggtggcggctacggcgaggagcggcccctgacc
tgcgtggacgccgtcgaagctgcggtcgactttttgaacgaatcgtccagagaatcgaat
ttccagtggaacgacgggcgctgtggtgcactggttgtgcctgcatggcgcaaagcgtac
atcctcgcaccgccgctttgcagtggtacgggcgctgccctagcccattgcggcatccgc
gacgacgtggtcaacgaaggcgccctcgatgccgacccaaccgcaggtcgcgacgcgcat
acacgaacctcctatggaccaggagcaatgctctggaccgaggatgtccaagaaacgcca
gtgagcgagcgcatcctccccgggatacccgccgcagagacgcgtggccgtaaactgctc
atcaccgagcgggatcaaggcattcaggatgcgcatcgagtctactattacgcggtcgag
ttggaggcgcttcttggtcatgttcgcattctggactgctgcttcctaaccggaaccgca
ctgccgaccatggtcatgctctacgaagaacgaccgacctgggcaggccgcgtcgaggca
gtgagcaactcgtgtgcgctggcggcgattgtgctacctccactgccggcaggcgcagcc
ggtgaagagccgctcgttgcctggcgaatccaaggccttccattcgacgcagaaaaagtc
gtaccactgccgtctgttgaatgggatcgtgcagcagagcagggtctgttgctaatcgcc
gccaatgtgctgttctggatccgtggcaatggacaaatcggtgccagtttaagcggaaat
cattttggtgataccttcatggagctcgatggttgccagctcccgggcgccttgtacggg
ggcaccgacagcgacatcatcagccgctgcaggacgtcacaagtgctccatttccgaggt
gcatgtatcgcgccggtgcgcttgcaccgttacgggctcttcctcgccgacggaaacgtc
taccagctggcgcttcacgcggatgcagaatacccgctgcgactcgaagcgcttcgtgtt
cgcggagagtcgcggttagcgccagctcccctggatgccaagctccttagccgagacctg
ctgtttgtggcggcgcatttaggctcctctgtactgtaccggatgacgcaagtgcacccg
catggacgacggacccgaacgtcagctgcagagaacgggacactgcacaaaaacgcgact
accaaagaagcacaatgggaattgcagcaacgggacaccatctttcaacttggtccgatt
gttgatttggtggtgattcccccgcgttacagtccaccagcgggtacgctgctggatccc
ggtgagatcctggctgcaacagggcatcaacatcagagctgcctcgcacgctgcacctat
caggtgcagactcgggagtggcaacgcattccctccgctggatgtcggcgagtctggtcc
ctgtacgcggatcacgacggcactgggatgcatcaagaagagcaggcgttccttctgttg
agtttgtccaagtccagtgtgattctcgatatccgtcgtggcttcgaacaggccgcagat
acacgggtgctgcttccgtcgccgaccatagcggccgggaatctagcccagagacgtctg
atcgctcaagtgcatcgtacgggtatccgcctgctggacgccaaccttgacgtcgtctac
gaagaggatatgctcttggccgcccttgagccggggacagctgtaagtggagcgagcgtg
gtcgatccgtatattgcggtgtggttcacgaatcatcgtctacaggtgtggaggttggag
catttttcagaggcggaggccgaacgaacgacttatcgcttgagtctggttttcagtagg
gagcatgtgctctgtgcaagcctctacgatggcgtgctgtgtcgggattttcaggccgct
tgcagaccaccgagaagcactggaaacctgcggacgtctggacggccaatgcgtttgagg
agacgcggggcgtccgcagcaccgggctcagcggcgactgcagcagcaacccagtcgagt
cgcgagacacatcgagcagtaccgccctctgcactgagtcgaggtcaacgagcgctcgca
ggagcggatctaccccctgaactgggcgcagaggagacatttctatatggagcgctcgca
ctgagcgacgcggtttcagatgcgactcccgagggagccagcaacggtacccccgagacg
actgcgcgaggctcgcaacccgaggagcctgtcgttcccgcgttgcacagcatgcttgca
gttgtttccgtggatggtgccctgtatttgtatgcgcttggcagcgaaaagaacttgttg
ttgctgcgatgcaagcgtttctttctgggcgtccaccaggttttggatgatcgatcgcga
caagctgcgtccttcacagatgctgcctcagcagaagcagacgctgaagcagagtcctcg
gcggcaacgacaacgataacgacgactccgccgacatcacccaggggtggtacgacgggc
atgctccatcgcatgcccggtgaagcaacgctcgaggtgtctgcactcgagagcgggact
cggaccacgacgcccagccagggcgccggtttgacttctttgtcgtcgtcgtcgtcgtcg
tctatgcctcgcaagcgtactgccacaaccggcgaggacgcaccgaaaggcctcggctct
atgcctgcgaacggccgagagcttggcccgagacgcacccgacaaggcaaagtgctcgac
gtttgtctagtcgacatcggcgagcgcacatgtccagttctggcggctgtgcttgcctcg
ggtgaggtggtgctctatcgcggctacgttgtgaaccgggggatcctctgctttgcacgc
gtcggtagcgatgccttgagcacggtgttgactccgagtgtcggtgtctccgcgaatgcg
ccgccgatgagtctgtcgacgtcaataggaacaaccgcacctgaacgagacagcaaagca
agcagtcgacgttccgtatccattcgtctgatgccgttccggcgtatccagggcaagtct
ggcatcagcatcatcggtcaacgggttattctggtgctcggagataccggatacccgacc
atccacccggtgcgaggccctgggctgcttgcgctcgcggatctgcaccacgagggtgta
tgttcgcaaggttttgtgtcggtggcgacggacggtaccgtccgtattgggcagtggcca
gtcctcgcccgagcgcaagccgttggcaactttctcgtgcagaagcacgcctggccgcag
cccgaatacgtagagcggcttctccacgatccctctacggacacgattctagcgatcgtg
ggacgtatggtgcccgcaaccgaagcagctgtcaagtatttgctagaggggaatcgctat
gagtcaatgctacgtcatgcacgacgcaaacaacaacaacaacaggaacaacaggaacaa
cagcaggagccagggctgcaagaagccgaggagtctgctgtccgagtcacgcgctcatca
gggatgcagcctccgcagccgctgctactgaacgcggacgctcgtcgagtaccagcgtct
cgcggtgatactgcagggatacgggcccgtggcgactcgtcgacggcggagcccatggat
atggacgacgtcgcgaatggtgcatccgcaatgaccacaccaggaggcgttaacggtacc
gcagagacaccttggccgtcaacgaccgcacgtagcgtcgacgagtccgtagcgggtgat
gtcgcagatgatccaccgaaagcgctggcggctttcgaagagcagaaacttcgcccattc
gattcgggtagagagcgggatctgccgctgctgatcgaccagcatgcggtcgtattgctt
gcacgaaactctctggaggtgctggcgcgttacgacctcgaacagaccgaggtcgggctg
gcgatgtgtgcaaccagaatccggcattttcagcgcaccggcgacgacgaggcaccacgt
ttcacagagcgagacgtgctcgtggttgggacgtgcttcctgcggggtgaggacaccagc
attcgcggtcgcctgcttgtttttgaaatcagtcgacaagagggccgccagcaccatcag
caccagcgaaccctctaccagatgcagacgcttgccgcaaccgaagtcaaaggagcagtt
tcggcggttgcgccggtcaagggcggcttcgtgtgctgcagcgctggaccgcgtctcgaa
gtctacaaactgatcgaggacgaaatgtcctgtatatcgttttatccgggtattaatttg
ttcttttcgcatgttggcacgttgaaacagtatattctcgcttcggatatgcggtatggt
gtttcgtttctcttctggaggtctcgcaacgtttcgcagaatttcctctgtcgcgatgag
gcgcaacgtgaactggttgcatcggaatggttgatgcacggtaccaaggcgaatgtactc
tcagcggacatgcttggcaacatcattgagttgagtattccgagtccagtggatcccgag
tcagccggtggaacgcgtatgacctttgaggccggtttccatgttgggtcgcggccgaac
gcggtgcgtcgggtacgcattgatgatccgagtgctgagacgccgcctccaaacgagccg
tcgtcactctggaatacgcatgtgatcttgctgggcaccgttgacgggatgattaccatg
gtttctccactgttacgcggcgtggcgaagaaactcgagctcgccgcccaagatctcatg
ctggagccggagcttcgcaaatggtgtttgtacgcccgttcctggcgagtgatgcgttcc
ttgacggtggcggcgggtcttcggaaaccgaagcgctctatcctcgatggcgatgtgttg
cagctgtacgggtctctggatacaccgcgtcggaaggagatcgcgcgcagaatcggcatg
cctcaggaagcgcttttcgaagcgatattcggtacgattgatgaggtattgcaggtattc
tag
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