Cyanidioschyzon merolae: CYME_CMS416C
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Entry
CYME_CMS416C CDS
T00175
Name
(RefSeq) ATP-dependent RNA helicase
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
cme
Cyanidioschyzon merolae
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cme03041
]
CYME_CMS416C
03009 Ribosome biogenesis [BR:
cme03009
]
CYME_CMS416C
Enzymes [BR:
cme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CYME_CMS416C
Spliceosome [BR:
cme03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
CYME_CMS416C
Ribosome biogenesis [BR:
cme03009
]
Eukaryotic type
90S particles
Helicases
CYME_CMS416C
Pre-60S particles
CYME_CMS416C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-GeneID:
16997485
NCBI-ProteinID:
XP_005539013
UniProt:
M1VHS8
LinkDB
All DBs
Position
19:complement(1036729..1038876)
Genome browser
AA seq
715 aa
AA seq
DB search
MKSRIRHASENSKRKQQADVVASRKRSARERPRACHSDLLARDADVSSVSATERLTSTAS
RPASGAAQVVARNAGAYGSSRTRTQAATFTDQLHAKRERCSESVKSASASTNAAAGNPNE
DAGVSICELQRAELRTPAPVMETELQNAAARTPADEEVASSRATVHEMEPLARPCPEVTQ
KSSPALQSLSSEHASEQEQPKPSSGLLTPHRFDSLPLSEPTLRGIEEMGFARMTEIQARA
IPLALSGRDILASARTGSGKTLAFLIPIVELLYKAKWMPRNGTGAIIIAPTRELAMQIFG
VLHDLASHHHQTRAIVMGGANRRTEAEKLINGTNILVATPGRLLDHLQSTRGFVFEHLRF
LVIDEADRCLEIGFEEEMHEILRILPKTRQTMLFSATQTTKVEDLAKVSFQQKPLHLGID
AEQPVATVEGLQQGFTIVPSEQRFRLLFTFLKRNQRKKIIVFMSSCNGVKFYAELLNYID
VPVLDLHGKQKQSKRTSTFFEFARREHATLLCTDVAARGLDIPAVDWIVQYDPPDEPKEY
IHRVGRTARGVHGRGRAILFLLPSEVGFLQHLRDAKVPLNEYEFPKEKLADIQTQLEKLV
EGNYYLQKSARDGFRSYLQAYASHSMKDVFNVHELDIAAVAKSFGFSAPPRICLDVLERA
KKIRRRGGGGGFGDEWKNRDRLKDLIRKRLASGQRFRASNPHGKRDEQDRRQFVS
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtcggatccggcacgcaagcgagaacagcaaacggaagcagcaggcggacgta
gtcgcgagccggaagcgatcggcgcgagagcgccctcgtgcttgtcacagcgacttgctc
gctcgcgacgctgacgtatcttctgttagcgcgacggagcgcttgacgagcaccgcgagc
aggcctgcttctggtgcggcacaagtcgtcgcgaggaacgctggcgcttacggttcatcc
agaacgcgcacgcaggctgcgactttcaccgatcagttgcacgccaagcgcgaacgctgc
tccgagtcggtgaagtcggcctccgcgtcaaccaacgcagctgctgggaacccgaatgaa
gacgcgggggtttcgatatgtgagttacaacgtgcagagttgcggacgccagctccggtg
atggaaaccgagcttcagaacgctgcagcaagaacgcccgcagatgaagaggttgcatcc
tcgcgagcaacagtgcacgagatggagcctctggccagaccctgcccagaggtgacacag
aagtcgtctcctgcgttacagagcttatcgtcggagcacgcctcggaacaggagcaaccg
aaaccgagttcaggccttctgacacctcatcgtttcgattcactgccgctatccgagccg
acgctacgaggcattgaggaaatgggtttcgcaaggatgacagagattcaggcgcgagcg
atcccgctagcgctgtctggtcgagatattctcgcttctgcgcgaacaggttccggtaag
acgctcgcatttctgatccccattgttgaattgctgtacaaggccaagtggatgccgcgt
aatggcactggtgcgatcatcatcgcgcctacccgcgagctggcgatgcagatctttggg
gtgcttcacgatcttgcttcacatcatcaccagacccgagcgatcgtcatgggtggtgca
aaccgccgaaccgaagctgaaaagctcatcaacggtacaaatattctcgttgcgacgcct
gggcgtttgctggaccatctacagtccacacggggctttgtttttgagcaccttcgcttt
ctcgtgattgatgaagcggatcgctgcttggaaatcggatttgaagaggagatgcatgaa
attctgcgaatactgccaaagacccggcagacaatgctcttttccgcaactcaaacaacc
aaagtggaggatctggccaaagtaagttttcagcagaaaccgcttcatctgggtatcgac
gcagaacagcctgttgccaccgttgagggcctgcagcagggcttcacgattgtgcccagc
gagcagcgtttccgcttgctgttcacgttcttgaagcgcaatcagcgcaagaagatcatc
gtcttcatgtcttcctgcaacggagtgaaattctatgccgagcttttgaactatatagac
gtccctgttctggatctgcacgggaaacagaaacagagcaagcgaacatcgacgttcttc
gagttcgctcggcgtgagcacgccacactcttatgcacggacgtagctgcgcgtggtctc
gatattcccgccgtcgactggattgtgcagtacgacccaccggacgagccgaaagagtac
atccaccgggtggggcgcaccgctcgaggcgttcatggtcgcggacgggcgattctcttt
ctgttgccatcggaagtcgggtttctgcagcatctgcgcgatgccaaagtgcctctgaac
gagtacgagtttcccaaagagaaacttgctgatattcagacccagctggaaaaattagtt
gaaggcaattactatcttcagaaatctgcgcgggacggattccgttcctacctccaagcg
tatgcgagtcactccatgaaagatgtattcaatgtgcacgagctcgacattgcggcggtg
gcgaaaagcttcggcttcagtgcaccgccgcgcatctgtctcgacgtcctcgagagagcg
aagaaaattcgacgacgcggaggcggtggcggatttggagatgagtggaagaatcgcgat
cgcctgaaagacctcattcggaaacggcttgcttcagggcaacgatttcgggcgagcaac
ccgcatgggaagcgtgacgaacaagatcgccgtcagtttgtgtcatag
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