KEGG   Cyanidioschyzon merolae: CYME_CMS420C
Entry
CYME_CMS420C      CDS       T00175                                 
Name
(RefSeq) hypothetical protein
  KO
K14408  cleavage stimulation factor subunit 3
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CYME_CMS420C
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cme03019]
    CYME_CMS420C
Messenger RNA biogenesis [BR:cme03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     CYME_CMS420C
SSDB
Motif
Pfam: Suf HAT_PRP39_N HAT_Syf1_CNRKL1_N HAT_PRP39_C TPR_14 TPR_19 HAT_Syf1_CNRKL1_C
Other DBs
NCBI-GeneID: 16997476
NCBI-ProteinID: XP_005539016
UniProt: M1V7D2
LinkDB
Position
19:1046915..1049851
AA seq 978 aa
MDDQDNVPRKARRTAAASADDRAQPSGSVAITDTDNTGNTTPSAQSVDLSENLMDSIPRR
EKQHMEKQSAPGTAGAETLDYEVPLDSPSLRWPEKTLSSTRAQELERTLAAEPWNADAWI
ALVEEAQRHPLTEAKAVYERALHRFPTGARLWKLYLEHLIREQAFPEAEKRFAYALPRCY
SVELCQLYLHYLRTVKKAPISVLIDAFEYVTALLPYEPASASLWNDYIALLMAVPIRNAH
DGAQRNRLLRSVLQRAVTLPLHNLDAFWRQFEQFESSQGKSGSSHASVATQPFHGAFLRA
RAEARGRRARREHLQLQALAVPPRRGAGIMEQAKRWAKYIRGEEANPHELSAAELEARLR
FAHEQRLVYMYRMPDAWLEYALYLAHRDDGNLVRSYPEAIAVLERAERALPDCLLVYFTL
ARLYEELDVEIARIAGQQKRKREYLQEEIERLGGSRLSNDDEAVGAPDERPSDADPDQSN
GDDTGSGSRESHIASARQSGSPKHGSGASLAPSTDTKTAATEAQSERDAPAASKSSGAPA
STEAAATGTKADTHSEGIGSRATAVYERLLARENLDAVQRTHAYIEYMWFSRRVLGVSAA
RSIFRRARHDPRCADIDALPNLYLAAATLETYCNHESGVAKRIFELGLRHLPDSTEMALC
YFDYLWQRNDGNELRMLIGRLLQTTLPDDAKLLLCDRWLSFEARYGSGGLQGLRLAEAER
KRLFSERQPSRLNDLLFYTSFLQNVPLNDDERALIEQNTSDSKSGSLAEAPQRDAGFVPG
GIIPSSALLYALGSNRPQASSARRPDDAVIEAGQPVRKGAARAERKAPSPAVENIPEKLT
LEEGLARLVGALPPALLQSAPPNPDFVIRHLLRLPASFQDLAVFNGGRELDSNAAGRRPG
RDKERPSRSSGDTYPSRTADASPVPFAESRLFQRLQRARQQTSRAPRPDAYGSGTDAAPA
SMQAPPPTRDIYRSRHRG
NT seq 2937 nt   +upstreamnt  +downstreamnt
atggacgaccaagacaacgtcccgcggaaggcacggcgaactgcggcagcgagtgctgac
gaccgagcccaacccagcgggagcgttgcaatcacagatacggacaacaccggaaacact
acacccagcgctcaaagcgtagatctctcagagaatctcatggactcgattcctcggcga
gagaaacagcatatggaaaagcagtctgctccgggtaccgcgggtgcagaaacgctcgac
tacgaggtgccgttggatagcccgtcgctgcgctggccagagaagacgctctccagcaca
cgagctcaagagctagaacgaacactggcggcggagccctggaacgcagacgcctggata
gcgctggtagaggaggcccagcgtcacccgctgacggaggccaaggcggtctacgaacgc
gcacttcaccggttcccgacaggtgcacgcctctggaaactctaccttgagcacctcatt
cgggaacaagcctttcctgaagccgagaagcgattcgcttacgcgcttcctcgctgttac
agtgttgagttgtgccagctctatctgcactatctgcgcaccgtaaaaaaggcgcctatc
agcgttctcatcgacgcgttcgagtatgtgactgcgcttttgccatacgaaccagcaagc
gcaagtctctggaacgactacatcgcgctgctaatggcggtgcccatacgcaacgctcat
gatggtgcacagagaaaccgcttgttgcgaagcgtgttgcagcgagctgtgacccttccg
ttgcacaacctggatgcgttctggcgacaattcgagcagtttgaatcaagtcagggaaaa
agcggctccagtcatgcatccgtggcgacacaacctttccatggggcctttcttcgggcc
cgagctgaggcccgtggccgacgagctcgccgcgagcacctccagctccaggcgctggcg
gttcctccgcgacgcggagccggcatcatggaacaagcaaagcgctgggcaaagtacatc
cggggcgaagaggcgaatccgcacgagctctccgctgctgaactagaagcgcgacttcga
ttcgcccatgagcagcggcttgtctacatgtatcgcatgccggacgcctggttggagtat
gcgctctatctcgcacatcgcgatgacggcaacctggtgcgcagctacccagaggctatt
gcggtgctggagcgagcagaacgtgcgcttcccgattgcctcctagtctatttcaccctt
gcccgcctttacgaggagctggatgttgaaattgctcgtatcgccggacagcagaaacgc
aagcgcgagtatttgcaggaggaaatagagagactcgggggatctcgtctctcgaatgat
gacgaagctgtgggcgctcccgacgagcgacccagtgacgctgaccccgaccagagcaac
ggtgacgacaccggcagcggcagccgcgagtcgcacatagcttccgctcggcagtctggg
tcgccaaagcatggaagcggcgcctcattggcgcccagcaccgatacaaaaacagcagcg
acagaggctcagtcggaaagagacgcaccagcagcgtccaagtctagcggtgcaccagcg
agcactgaagctgccgctaccggcaccaaggcggatacgcacagtgaaggcatcggcagt
cgagcaaccgccgtctacgaacgattgcttgcacgtgaaaatctggatgcagtccaacgc
actcatgcctacatagagtacatgtggtttagtcgacgtgttctcggggtgtcggctgct
cggtctatcttccgacgggcgcgccacgaccctcgctgtgcagatatcgacgcgctgccc
aacctctacctcgcagcagcgactctagagacgtattgcaatcacgagtcgggtgttgcc
aaacgtatttttgagcttggactgcgtcacttgccggattcgacggagatggcgctgtgc
tatttcgattacctgtggcagcgaaacgatggcaatgaactgcgcatgttgattgggcgg
ctcctgcagacaacgctcccagacgatgccaagctgctgctctgtgatcgctggttgtcc
tttgaggcacgctacgggagcggtggactgcaaggtctgcgcctcgctgaagccgagcga
aaacgcctgttcagcgagcggcaaccgtcgcgcctcaatgacctcctgttctatacctcg
ttcctgcaaaatgttccattgaatgacgacgaacgggccctcatcgagcaaaacaccagt
gattccaagtcgggttcgctggcggaagcgcctcaacgggacgcaggtttcgtccccggc
ggcatcattccatccagtgcgctgctctacgcgctcggttcgaataggccacaggcatcg
tccgcgcgtcgaccagatgacgcagttatcgaagcagggcaacctgtacgcaagggagcc
gctcgtgccgagcgaaaagcaccatcgccggctgtggagaacatcccggagaagctgacg
ctcgaggagggtctcgcacgcctcgtgggagcactgccaccagcgctattgcagagcgcc
ccaccgaaccccgactttgtaatcagacatttattgcggttaccagcgagctttcaagat
cttgcagtcttcaacggcggtcgcgagctcgactcgaatgccgctggacgtcgtccaggg
cgggacaaggagcgtccaagtcgctccagtggcgacacctatccgagtcgcactgctgat
gcgagtcctgtgccattcgctgaaagtcgcctgtttcagcggttgcagcgtgctcgacaa
caaacaagtcgtgctcctcgaccggacgcttacggctccgggacagacgcagcgcctgct
tcgatgcaagcaccaccaccgacccgcgatatctatcgcagtcgtcaccggggctga

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