Cyanidioschyzon merolae: CYME_CMS420C
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Entry
CYME_CMS420C CDS
T00175
Name
(RefSeq) hypothetical protein
KO
K14408
cleavage stimulation factor subunit 3
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CYME_CMS420C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CMS420C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
CYME_CMS420C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
Motif
Other DBs
NCBI-GeneID:
16997476
NCBI-ProteinID:
XP_005539016
UniProt:
M1V7D2
LinkDB
All DBs
Position
19:1046915..1049851
Genome browser
AA seq
978 aa
AA seq
DB search
MDDQDNVPRKARRTAAASADDRAQPSGSVAITDTDNTGNTTPSAQSVDLSENLMDSIPRR
EKQHMEKQSAPGTAGAETLDYEVPLDSPSLRWPEKTLSSTRAQELERTLAAEPWNADAWI
ALVEEAQRHPLTEAKAVYERALHRFPTGARLWKLYLEHLIREQAFPEAEKRFAYALPRCY
SVELCQLYLHYLRTVKKAPISVLIDAFEYVTALLPYEPASASLWNDYIALLMAVPIRNAH
DGAQRNRLLRSVLQRAVTLPLHNLDAFWRQFEQFESSQGKSGSSHASVATQPFHGAFLRA
RAEARGRRARREHLQLQALAVPPRRGAGIMEQAKRWAKYIRGEEANPHELSAAELEARLR
FAHEQRLVYMYRMPDAWLEYALYLAHRDDGNLVRSYPEAIAVLERAERALPDCLLVYFTL
ARLYEELDVEIARIAGQQKRKREYLQEEIERLGGSRLSNDDEAVGAPDERPSDADPDQSN
GDDTGSGSRESHIASARQSGSPKHGSGASLAPSTDTKTAATEAQSERDAPAASKSSGAPA
STEAAATGTKADTHSEGIGSRATAVYERLLARENLDAVQRTHAYIEYMWFSRRVLGVSAA
RSIFRRARHDPRCADIDALPNLYLAAATLETYCNHESGVAKRIFELGLRHLPDSTEMALC
YFDYLWQRNDGNELRMLIGRLLQTTLPDDAKLLLCDRWLSFEARYGSGGLQGLRLAEAER
KRLFSERQPSRLNDLLFYTSFLQNVPLNDDERALIEQNTSDSKSGSLAEAPQRDAGFVPG
GIIPSSALLYALGSNRPQASSARRPDDAVIEAGQPVRKGAARAERKAPSPAVENIPEKLT
LEEGLARLVGALPPALLQSAPPNPDFVIRHLLRLPASFQDLAVFNGGRELDSNAAGRRPG
RDKERPSRSSGDTYPSRTADASPVPFAESRLFQRLQRARQQTSRAPRPDAYGSGTDAAPA
SMQAPPPTRDIYRSRHRG
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggacgaccaagacaacgtcccgcggaaggcacggcgaactgcggcagcgagtgctgac
gaccgagcccaacccagcgggagcgttgcaatcacagatacggacaacaccggaaacact
acacccagcgctcaaagcgtagatctctcagagaatctcatggactcgattcctcggcga
gagaaacagcatatggaaaagcagtctgctccgggtaccgcgggtgcagaaacgctcgac
tacgaggtgccgttggatagcccgtcgctgcgctggccagagaagacgctctccagcaca
cgagctcaagagctagaacgaacactggcggcggagccctggaacgcagacgcctggata
gcgctggtagaggaggcccagcgtcacccgctgacggaggccaaggcggtctacgaacgc
gcacttcaccggttcccgacaggtgcacgcctctggaaactctaccttgagcacctcatt
cgggaacaagcctttcctgaagccgagaagcgattcgcttacgcgcttcctcgctgttac
agtgttgagttgtgccagctctatctgcactatctgcgcaccgtaaaaaaggcgcctatc
agcgttctcatcgacgcgttcgagtatgtgactgcgcttttgccatacgaaccagcaagc
gcaagtctctggaacgactacatcgcgctgctaatggcggtgcccatacgcaacgctcat
gatggtgcacagagaaaccgcttgttgcgaagcgtgttgcagcgagctgtgacccttccg
ttgcacaacctggatgcgttctggcgacaattcgagcagtttgaatcaagtcagggaaaa
agcggctccagtcatgcatccgtggcgacacaacctttccatggggcctttcttcgggcc
cgagctgaggcccgtggccgacgagctcgccgcgagcacctccagctccaggcgctggcg
gttcctccgcgacgcggagccggcatcatggaacaagcaaagcgctgggcaaagtacatc
cggggcgaagaggcgaatccgcacgagctctccgctgctgaactagaagcgcgacttcga
ttcgcccatgagcagcggcttgtctacatgtatcgcatgccggacgcctggttggagtat
gcgctctatctcgcacatcgcgatgacggcaacctggtgcgcagctacccagaggctatt
gcggtgctggagcgagcagaacgtgcgcttcccgattgcctcctagtctatttcaccctt
gcccgcctttacgaggagctggatgttgaaattgctcgtatcgccggacagcagaaacgc
aagcgcgagtatttgcaggaggaaatagagagactcgggggatctcgtctctcgaatgat
gacgaagctgtgggcgctcccgacgagcgacccagtgacgctgaccccgaccagagcaac
ggtgacgacaccggcagcggcagccgcgagtcgcacatagcttccgctcggcagtctggg
tcgccaaagcatggaagcggcgcctcattggcgcccagcaccgatacaaaaacagcagcg
acagaggctcagtcggaaagagacgcaccagcagcgtccaagtctagcggtgcaccagcg
agcactgaagctgccgctaccggcaccaaggcggatacgcacagtgaaggcatcggcagt
cgagcaaccgccgtctacgaacgattgcttgcacgtgaaaatctggatgcagtccaacgc
actcatgcctacatagagtacatgtggtttagtcgacgtgttctcggggtgtcggctgct
cggtctatcttccgacgggcgcgccacgaccctcgctgtgcagatatcgacgcgctgccc
aacctctacctcgcagcagcgactctagagacgtattgcaatcacgagtcgggtgttgcc
aaacgtatttttgagcttggactgcgtcacttgccggattcgacggagatggcgctgtgc
tatttcgattacctgtggcagcgaaacgatggcaatgaactgcgcatgttgattgggcgg
ctcctgcagacaacgctcccagacgatgccaagctgctgctctgtgatcgctggttgtcc
tttgaggcacgctacgggagcggtggactgcaaggtctgcgcctcgctgaagccgagcga
aaacgcctgttcagcgagcggcaaccgtcgcgcctcaatgacctcctgttctatacctcg
ttcctgcaaaatgttccattgaatgacgacgaacgggccctcatcgagcaaaacaccagt
gattccaagtcgggttcgctggcggaagcgcctcaacgggacgcaggtttcgtccccggc
ggcatcattccatccagtgcgctgctctacgcgctcggttcgaataggccacaggcatcg
tccgcgcgtcgaccagatgacgcagttatcgaagcagggcaacctgtacgcaagggagcc
gctcgtgccgagcgaaaagcaccatcgccggctgtggagaacatcccggagaagctgacg
ctcgaggagggtctcgcacgcctcgtgggagcactgccaccagcgctattgcagagcgcc
ccaccgaaccccgactttgtaatcagacatttattgcggttaccagcgagctttcaagat
cttgcagtcttcaacggcggtcgcgagctcgactcgaatgccgctggacgtcgtccaggg
cgggacaaggagcgtccaagtcgctccagtggcgacacctatccgagtcgcactgctgat
gcgagtcctgtgccattcgctgaaagtcgcctgtttcagcggttgcagcgtgctcgacaa
caaacaagtcgtgctcctcgaccggacgcttacggctccgggacagacgcagcgcctgct
tcgatgcaagcaccaccaccgacccgcgatatctatcgcagtcgtcaccggggctga
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