Cyanidioschyzon merolae: CYME_CMS459C
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Entry
CYME_CMS459C CDS
T00175
Name
(RefSeq) similar to RNA export mediator
KO
K18723
nucleoporin GLE1
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03013
Nucleocytoplasmic transport
cme03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CYME_CMS459C
03015 mRNA surveillance pathway
CYME_CMS459C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CMS459C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
CYME_CMS459C
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GLE1
Motif
Other DBs
NCBI-GeneID:
16997529
NCBI-ProteinID:
XP_005539046
UniProt:
M1V7E2
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Position
19:1147448..1149796
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AA seq
782 aa
AA seq
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MVVRSRTEQLRRMAAAQWEASWGAAASLQDHRTEGLVEYLESTRNAGTGKTPPRSGASAA
PDAPQFASNEKRAPQQEPLRPLNEALVRLTPTTDFFENVQSTGVVSVSTALESGGDRWTT
GQRLAPKTFASGSAPGSADQAAKPEIVLIQAQQKSLTPSISKRTRENGSGRSRVHAKPVP
ESSFGDVEARTCAFIEQWLWVALTANKTSIGTSQSQVDGLIMDGWWRWNTPSNACPWTKE
CVSLARVLEKLECERLAASEQALDRLQQRLCEVRAVSTTAGAAAAAATLGSAGHVTKSPS
GVRGASVPGETFPSLDAIHSPCGDPQAPAITKTTTATTMKLTGSASAHSGATESASSRYA
QGAKLPSSLPVSGSVSSPDASALTLEREPHTNAHTRAYSKPETKPIQTSRAGVTSKDASP
SPSPSPRPHTSLLTPTPASTLAPDTRRDASVDASTRATSAIDGTAASDAPTTQVSRASPE
TALPADVQQVLDHYTQICNLADKFQQDPASQSLRFQLRKRINLAVNQIGLSLPSVLHKSS
VLAALLHESLTTETAVESSESVSLLDAWLQLQVVRRIVREGAEQVVVSLPSSFALGAVLV
LLTQQHPRLKPVVLGTFYQLCPYTIPHWYRRRPGESLEAYLVRLGYSKPNESFESYYERM
GGYLSLFAAMLQTALPNMHPNPYGTGMLWTWSARVVNAKPRRMTCLLLGNVFEVAGYALS
QQYGNQFRKLLRLVEAEVLPRLPKDAPPGPTARLKHWIEEALRSGPQPCPGHILPMRDSQ
NT
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggtcgttcgtagccgaacggaacaacttcgtcggatggcggctgcacaatgggaggct
tcctggggcgcagcggcttccctgcaagaccatcgtacagagggcctggtcgagtatctt
gagagcacccgcaacgcaggcacaggaaagacacctccgcggagcggcgcaagtgctgcg
ccagacgcaccccagtttgcgagcaacgagaagcgagcgcctcagcaagagcccctacga
ccattgaacgaggcgctggtgcgtttaacgcctacgacagacttttttgagaacgtgcaa
agtacgggcgtggtgtcggtttcgacagctctggaaagtggcggcgacaggtggacaaca
ggtcaacgtttagctccgaaaacgttcgcgtcgggaagcgctccaggttctgcagaccaa
gcagcaaagccagaaatcgtactcattcaggctcaacaaaagagcttgacaccttcgata
tcgaaaaggacgagagagaatggctcagggcgatccagagtacatgcgaagccagtaccc
gagtcctcgtttggcgatgttgaggcacgaacctgtgcgtttatagagcaatggctctgg
gtggcacttactgctaacaagaccagcattggaacgtcccagagtcaggtagatggcctc
atcatggacgggtggtggaggtggaacacgcccagcaacgcatgcccatggacaaaggag
tgcgtctcacttgcccgcgttctcgagaaactcgaatgtgagcgacttgctgcatcggag
caagccctggatcgtctccaacagcgactatgtgaagtgcgggccgtttcaaccacagca
ggagcagcagcggcagcagctactttaggttccgcgggacatgtcacaaagtcgccctct
ggagtgcgaggcgcctctgtaccaggggaaacctttccctcgctggatgcaatacattct
ccatgtggcgatccgcaagcaccagcaataacaaaaacaacaacagcaacaacgatgaaa
cttactgggagcgctagcgcacattctggtgccactgaaagcgcctcatctaggtatgca
caaggcgcaaaacttccatcttctctcccggtaagtggtagcgtttcgagtccggatgcg
tcagccttgacactcgaacgggagccgcacaccaatgcccacacccgggcatactccaaa
ccggaaacgaaaccgattcagactagtcgagctggagtcacgtcgaaggacgcgtcaccg
tcaccgtcaccgtcaccaagaccacatacatcgctgctgacaccgactcctgcaagcaca
ctcgcaccagacacgagaagagatgcatccgtggacgcttcaacccgtgcaacatcggct
atcgacggcactgcagcgagcgacgcgccgacgacgcaggtatcccgtgcctctccggaa
acagcgcttcccgcagatgtgcaacaggtgttggatcactatacgcaaatctgcaacctg
gcggacaagttccagcaagatccagcgtcacagtctctgcgtttccagttgcgaaaacgc
attaacttggcagtcaaccagattgggctatcgttaccctcggtcctgcacaagtccagt
gtcctcgcggcgctgctgcacgagtcactcacgactgagactgcggtcgagtcatcagaa
tccgtctccttgctggacgcttggttacagttgcaggttgttcgacgaatcgttcgtgaa
ggcgcggagcaggtggttgtctccctgccgtccagttttgccctgggtgcggtgctcgtg
ctcttgacccagcaacatccacgtctgaaaccagtggtgctgggcaccttttatcaattg
tgtccgtacacgatcccgcactggtatcgacgtcgacctggagagtcgctggaagcgtac
ctggttcggctgggctacagcaaacctaacgagtccttcgagagctactacgagcgcatg
ggcggatacctctcgctctttgcagctatgctacagaccgctttaccgaatatgcacccg
aacccgtacggcactggcatgctttggacttggagcgcccgcgttgtgaacgctaaaccg
cggcgcatgacatgcctgcttctaggcaacgtgttcgaagtcgctggatatgcgctgagc
caacagtacggcaaccagttccggaaactgctacgtcttgtggaggcagaagtgctccca
cgactgcccaaagacgcaccaccgggtccgacagctcgcctgaaacactggatagaggag
gcgctgcgcagtggaccgcagccatgtccagggcatatcctgcctatgcgggactcgcaa
aacacctaa
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