Cyanidioschyzon merolae: CYME_CMS464C
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Entry
CYME_CMS464C CDS
T00175
Name
(RefSeq) TBP-associated factor 172, similar to SWI2/SNF2 family
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
cme
Cyanidioschyzon merolae
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cme03021
]
CYME_CMS464C
Transcription machinery [BR:
cme03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
CYME_CMS464C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HEAT_EF3_N
HEAT_2
HEAT
HEAT_EZ
IL32
HisK_N
Motif
Other DBs
NCBI-GeneID:
16997534
NCBI-ProteinID:
XP_005539050
UniProt:
M1VC48
LinkDB
All DBs
Position
19:complement(1161801..1167443)
Genome browser
AA seq
1880 aa
AA seq
DB search
MLLQKQQSRLDGLLALLEAKDTSTSVRRLAAQQLAELVDAQPSDAAFIIDPGSVHVLNQL
LRVVLHSKVWDARICAGSALKLVVQRLQTCLQAPANLDNDEALNNLLTLRQLDPKFLMDT
GSVFSSSSGVEYMVAAGDVREQWVELRRELLGGVAATAIDLDIGVSLADIAERKQNTEQA
TPKNALRVPQRRKTAPLQSNVCKRPRAPTSLKADVLDSVHTDSHEHMNDGDDDNGDKDVD
RPSRKTSVQAGSIELETENDLGTVTLDAALHRLVCILADSLLSPDWETRHGAAVATRDML
SVRAFREWLPMEEREDIASRMYVLLAMDRFRDYASDQVVAPVPETVSMALGSVAVGLDAE
TAAQLESHLLELIRYKEEWQARHGGLLGMRYLLAVRADLRAKRLPETLPVLLDVLKSDDD
DVIAAACEVIILIAEEIHRLDIERSTNHLTEILGACWDNLGSFDELSACVTALVRCIEAL
LRARPSSCSILGEGPARVFRLLRHRNGETRRAALSCLMQGLRALPEASPVRRTLDEAGLY
SAIWAAWLLETGTDAGIGGKLREFWYLLCDTRCTFVENDRETPQEQVPDASQHAGVIIQP
APGTPAAVPQKSLLDNVDGTKPVEALLGCSRHPLEVLLLRAAAEARSPVEAQKLLERLFQ
RMHWSLPGTAVAPVSSGHDAGYEMQLQSAEALACYIRMHPHCLEGERHGLASWLATLAAA
SSLTQRRFLALTGRALETCPAWLLTAVEAQLALLERSTDTLHEEAHAELDPLFWQTIRSL
RQVQPAQVPALAPEQTPRTADLGALFGACTRDDLWEQVTDPEAAARLTAMRLNVRSAILR
CCKTENTGRLLVAAAAVGALVRHLPELPSRVTPWIRILLGVLLEQLPDGFGVPLFDAHDA
CSLVECAQEVAAMDLARLTQRMKRGSKARDQVVKNLITARCSRALAALARVYGPGLFTEL
PQMEQEVFGSVESVLPNAPASADTDETKAEQHQRCDLVLCAVADDLDSTLVSRLLMLFPA
LIRRRARALVPLCCRFTRPAMEAVIQHLLPLLEPGEEAPLPAVPVNRHANTTCDTYEARF
QAIALLAEIVHSLGERIIPYAAFLVVPLLGRLVDQDERVRSLAAMVFGELVRLLPLEGAL
PADELLSPALQQQLSSARDFIAQLLGQKPLEVFRLSIPIGDNVQLRTYQQEGLNWLAFLH
RYGLHGALCDDMGLGKTLMTLCILAADRCGLVGGPAGARLSSRSSTSGHRDGVDAPAQND
GQVALEASAGTTPLPSLVVCPASVMHHWHDEVLRFFPRHLTPVLVYAGAPGQRQELAQQL
RGAERPPLVITSYEVVRSDLEKLASLRYAYVVLDEGHMIKNARSKLSQAVRRLHARHRLI
LTGTPIQNNVTELWALFDFLMPGYLGTEQSFVAQYAKPIQAARHPKCSDAAREAGERALA
ALHRQVLPFILRRMKENVMKELPPKVIQDRICALSDIQRFIYDSFVQTAPLEWLAETRAP
TLAATAAEVEAAPRDTDEDAGQVPALTPKRLSGSSHVFYALMFLRRLCTHPRLILSELAP
ELRRQVEEQLNRAQLDWNSLDIAPKMLALGELLYECGIASDDTSSAGASIIDATVQTWDT
TSQRAEKKHRALIFAQLKETLDIIETDVLQRWYPQVSYLRLDGSIVDPRIRQDLVHRFNR
DPTIDCLLLTTHVGGLGLNLTGADTVIFVECDYNPTVDLQAMDRAHRIGQTRVVTVHRLI
TRGTIEEKIMSIQRFKMHLATSVVNQENASLRLMNTEQILELFRPVAATGTAGALDAKAE
IPLPSAETGSARRRAPGKDAHGEAGGRSTGAWRMLARIPEQAAAEAYGEEFQRARAFVQE
LLTSDQEGSALVQMEHDSKR
NT seq
5643 nt
NT seq
+upstream
nt +downstream
nt
atgcttctccagaaacaacagagtcggcttgatggactactggctctgctggaggcaaag
gataccagtacgagcgtccgacgactggcggcccagcaactcgccgaactcgttgacgct
caaccctcggatgcagctttcatcatagatcctggctccgtacacgttctgaaccagctg
ttgcgggttgttttgcactcgaaagtatgggatgctcgaatatgtgctggatcggcgttg
aaactcgtcgtccaacggctgcagacctgtttgcaggcgccggcaaacctcgacaacgac
gaagcgttaaacaacttgctcacactgcggcaactcgacccgaaattcctcatggatacg
ggctcagtgttttcctcatcaagcggagtcgagtacatggtcgcggcaggcgacgttcgt
gagcagtgggtagagctgcgtcgagagctcctcgggggcgtggctgccaccgcaatcgat
ctggacattggcgtcagtctcgcagatattgcggaacggaagcagaatacagagcaagcg
actccgaaaaacgcattgagggtgcctcagcggcggaagacggcacctctgcagtcgaac
gtatgcaagcgaccacgagctccaacgtcgctcaaagcggacgttctggactccgtccac
accgactcgcatgaacatatgaacgacggcgatgacgacaacggcgacaaggacgttgac
cgcccatcgagaaagacttcagtccaagcgggttctattgagctcgaaacggaaaacgac
ctcggcactgtaacgctggatgcagcgcttcaccgactggtatgcatcctggcggattcg
ctactctcgcccgactgggagacgcgccacggggcagctgtcgcaacccgagacatgctc
tcggtaagagcttttcgtgaatggctaccgatggaagaacgtgaggacattgcttctcgc
atgtacgtgctcctggctatggatcgcttccgcgactacgcttccgatcaagtggtagca
ccggtgccagaaactgtctccatggcgctcggctcggtggctgtcggcctcgacgctgaa
accgctgcccagttagagtctcatttgctcgaattgatccgatataaggaggagtggcag
gcacggcacggcggtttgctcggcatgcgctatctacttgcagtgcgggcggatctgcga
gcgaaacggctgccagagacgttgccggtgctcctcgatgtgctgaaatccgatgacgat
gacgtgatagcagcagcatgtgaggttatcatattgattgccgaagagatccatcgactg
gatatcgagcgcagcacgaatcatcttacagagattttgggcgcttgctgggacaatctc
ggatcctttgatgagctcagtgcatgtgtgactgctctagttcgttgcatcgaagcgctc
ctgcgggccagaccttcgtcttgctcgatcctgggcgagggtccagctcgggtgtttcgt
ctcctgcgtcatcgcaacggagaaacacgtcgcgctgctctcagttgtctgatgcagggt
ttgcgcgccttgcccgaggcttcgccagttcgccgcactctcgacgaggctggactctat
tcagcgatatgggcagcgtggctgctcgaaacgggtactgatgcggggatcggtggaaag
ctgcgcgaattttggtatctgctctgcgatacccggtgcacatttgtggagaatgaccgg
gaaactccacaggagcaagtcccagatgcttcgcagcatgccggtgtgattatccagcca
gcgccgggtacacctgcagctgtaccccagaagtctcttcttgacaatgtcgacggcaca
aagccggtagaagcattgctgggctgctcccggcacccgcttgaagtgctcctgctgcgc
gcagcagcagaagctcgatccccggtcgaagcgcagaagctgctcgagcgactcttccag
cgaatgcattggtcattaccgggcacagctgtggcacccgtatcctctggtcacgatgct
ggctatgaaatgcagcttcaaagcgcagaagcgctcgcgtgctacatccggatgcacccg
cactgtctcgaaggcgagcggcatggcttggcaagctggctagcaacgctcgccgcagcg
tcctcattgacgcagcgccgtttcctcgccttgactggacgcgcactggaaacatgtccg
gcgtggttgttgactgccgtggaggcgcagctcgcactcttggagcgctcaacggatacg
ctgcacgaggaagcgcacgctgaactggatccactcttctggcagacaattcgttctctg
cgacaggtgcagccggcgcaggtaccagcgctagctccggaacagacaccgcgaacagca
gatcttggagcgcttttcggggcatgcactagggatgatctttgggagcaggttacggac
ccagaagcggcagcgcggctcacagccatgcgtctgaatgtccgatccgcgatccttcgt
tgctgcaaaacagagaataccggtcgcctgttggttgcagcggcagctgtgggggccctc
gtgcgccacctccccgagctaccgagccgtgtaaccccatggatccgtatcctccttggc
gtcctgctggaacagctgcccgatggcttcggcgttccgcttttcgacgcgcatgacgca
tgctctctggtcgagtgcgctcaggaggtcgcagctatggatctcgctcgcttgacgcaa
cgcatgaagagaggtagcaaagcgcgagatcaggtcgtgaagaacctcatcacagcgagg
tgctcgcgagcgttggcagcactggcgcgagtctacggaccaggcctgtttacggagcta
cctcaaatggaacaggaggttttcggatcagtcgagtctgtgcttccgaatgcacccgcg
agcgcagataccgacgagaccaaagccgagcaacaccaacgatgtgacctggtgctctgt
gcggtagccgatgacctggactccaccttggtgtcgcgcttgttgatgctgttcccagcg
ctcattcgtcgtcgagcgcgagcactggtacctctatgttgtcgcttcacgcgtccggcc
atggaagctgtcattcagcacctgctgccgctcctggagccgggcgaagaggcaccactt
cctgccgtgcccgtgaaccggcacgcaaacacgacctgcgatacctacgaagcacgcttt
caggcaatagcgctcttagcggaaatcgtgcacagtctgggagagcgcatcattccttat
gcggcttttctggtggtacccctgctcggacgtctcgtagatcaagatgaacgtgtacgc
agtctcgccgcgatggtctttggggaacttgtccgtctgttgccattggaaggcgccttg
ccggcagacgagttgctgtcgccagcgctccagcagcagctaagcagtgcccgcgacttt
atcgcccagcttctcgggcaaaagcctctcgaagtgttccggttgagcattcccattggc
gacaacgttcaattgcgcacatatcagcaagagggtctcaactggttggcgtttctccat
cgctacggactgcacggagcactctgcgacgacatgggtctcggtaagacgctaatgacg
ctctgcatcttggctgctgatcgatgcggactagtgggcggcccagctggtgcccgactc
tccagtcgaagtagcacgagtggtcatcgtgatggtgtcgatgctcctgcacaaaacgat
gggcaggtcgctctcgaggcgagcgctggcacgactccgctcccgagtctggtcgtttgt
ccagccagtgtgatgcaccactggcatgatgaggtgctgcgtttcttcccaaggcacctg
acgccggtgcttgtgtacgctggcgcgcccggtcagcggcaggagctcgcacaacagctt
cgcggtgctgaacgaccaccgctcgtgattaccagctatgaagtcgttcgaagcgacctg
gagaagctagctagcctgcgctacgcctatgtggtgctcgacgaaggccacatgatcaag
aacgctcgctcgaaactgtcgcaagccgtgcgacgattgcacgcccgtcaccgtctgatt
ctgacgggaacaccgattcagaacaatgtaacggaactgtgggccttgtttgactttttg
atgcccggctatctgggcacagagcagtcgtttgttgcccagtatgccaagcctatccag
gcggcacgtcatcccaagtgcagcgacgcagcacgagaggccggtgagcgggccctggct
gcgctccaccgccaggttctcccgtttatccttcgacgaatgaaggaaaacgtcatgaag
gaactgccgcccaaagtcatccaggatcgaatctgtgccctcagcgatatacagcgcttc
atctacgactcgtttgtgcagactgctccgctggagtggctcgcggagactcgtgcacca
acactggcagcgacggcagcggaagtggaagcagcgccccgcgacaccgacgaggatgct
ggacaggtcccagcgctgacgccgaaacgactctccggttcgagtcatgttttttatgca
ttgatgttcctacgacgcctatgtacgcatccgcgattgatcctatctgaactcgcgccc
gagctgcgacgccaggtagaggagcagctgaatcgagcccaactagactggaacagcctc
gacatcgctcccaaaatgcttgcactcggggagcttctctacgagtgcggtatcgccagc
gacgacaccagcagtgctggcgccagtatcatcgacgctaccgtgcagacgtgggacaca
acgtctcagcgcgcagaaaagaagcatcgtgcgctcatattcgcacaactgaaagagacg
ctggacatcatcgagacagacgtcttgcaacgttggtatccccaggtgagttaccttcga
ctggacgggagcattgtcgatccgcgtattcgccaggatctcgtccatcgctttaaccgt
gacccgacgattgactgccttttgctgaccacacacgtcgggggtctcgggctgaacctc
accggtgccgatacggtcattttcgtggaatgtgactacaaccccacggtagacttgcag
gcaatggatcgagcgcaccggatcggtcagacgcgcgtggtgacagtgcatcgtctgatt
acccgcggtaccatcgaggagaagatcatgagcattcagcgctttaagatgcatctcgcc
accagcgtggtgaaccaggagaacgcttcgctgcgtctcatgaacaccgagcagattctg
gaattgtttcgaccggtggcggcgacaggtaccgctggggctctcgatgccaaggccgag
ataccgctgccgtccgcggaaactgggtcagctcgtcgacgtgcgcccggaaaagacgct
catggagaagctggaggtcgcagcacaggcgcttggcggatgctcgcacgcatacccgaa
caagcggccgccgaggcgtacggagaggagttccaacgggcacgtgcctttgtgcaggag
cttctcacgagcgatcaagaaggctcggcgctggtacagatggagcacgattccaagcgc
tga
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