Cyanidioschyzon merolae: CYME_CMT376C
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Entry
CYME_CMT376C CDS
T00175
Name
(RefSeq) exosome complex exonuclease Rrp4
KO
K03679
exosome complex component RRP4
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYME_CMT376C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CMT376C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CYME_CMT376C
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
CYME_CMT376C
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Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
16998127
NCBI-ProteinID:
XP_005539362
UniProt:
M1UXT9
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All DBs
Position
20:complement(935431..936348)
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AA seq
305 aa
AA seq
DB search
MEEQKATANGRFHTPLEQRIPLPKVAPAASLALPGDAIYAPEQNTLRGHGIFWTPSDESK
VLRATLAGTVERINKLVTIRSWRGRYVPNVGDVVVGRIAQVLPASRRWKVDIQARQDAVL
TLFAIRLPGAVQRRRTREDELNMRAFYAETDLIAAEVQEIKADGSIMLHTRLEDKFGRLS
QFGVFVSVPPGLIRRTGRAFASLGYPHLWVVLGVNGYIWIYWNPEETDRAGAVADEAEPT
STSLLTTGDAEALCRARNAVLVLSMLSLNVSIESIRYVFAAGAVTDPAAMLEPRFLQAMQ
KMLGE
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcaaaaagccaccgcaaacggccgcttccataccccgttggaacaacgtatc
cccctaccaaaggttgcacctgcagcatcactggctcttccgggggatgctatttacgcc
ccggaacaaaatacgctcagaggtcatggaatattctggacacctagtgacgaatcaaaa
gtattgcgggcaaccttggcaggcacggtcgaacgcatcaacaaactggtcaccattcgg
tcctggcgagggcgttatgttcccaacgttggtgacgttgtcgttggtcgaatcgctcag
gtgctgccggcctcgcgtcggtggaaagtagatatccaagcacgacaagatgcggtgctc
acgctcttcgcgatccgtttaccgggagcggtgcaacgccgccgcaccagggaggacgaa
cttaatatgcgggctttttacgccgaaaccgatctcatcgctgctgaggttcaggaaatc
aaagcagacggctccattatgctgcatacgcgcctcgaggataagttcggtcgcctcagc
cagttcggcgtcttcgtgtccgttccgcctggactgattcgccgcactggtcgagcattt
gccagcctcggttatccgcatctttgggttgtacttggtgtcaatggttacatctggatt
tattggaatcctgaggaaacagaccgcgctggtgcggtagcagatgaagcggagcccacg
tcgacgtcgctgctgacgacgggcgacgccgaggcgctctgtcgagcgcggaatgccgtg
cttgtgctgagcatgctctcactgaatgtttcgatcgaaagcattcgatatgttttcgca
gctggtgcagtcactgatccagctgcgatgctcgaacctcgttttcttcaagccatgcaa
aagatgcttggcgaatag
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