Cyanidioschyzon merolae: CYME_CMT515C
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Entry
CYME_CMT515C CDS
T00175
Name
(RefSeq) chromatin assembly factor 1 55 kDa subunit
KO
K10752
histone-binding protein RBBP4
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03082
ATP-dependent chromatin remodeling
cme03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
CYME_CMT515C
03083 Polycomb repressive complex
CYME_CMT515C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cme03036
]
CYME_CMT515C
Chromosome and associated proteins [BR:
cme03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
CYME_CMT515C
Histone modification proteins
HAT complexes
HATB complex
CYME_CMT515C
HDAC complexes
Sin3A-HDAC complex
CYME_CMT515C
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
CYME_CMT515C
PRC2.2
CYME_CMT515C
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
CYME_CMT515C
Heterochromatin formation proteins
Other heterochromatin formation proteins
CYME_CMT515C
Chromatin remodeling factors
NuRD complex
CYME_CMT515C
NuRF complex
CYME_CMT515C
NuRF complex (fruit fly)
CYME_CMT515C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
Beta-prop_EML_2
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_EML
WD_LRWD1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
NBCH_WD40
Beta-prop_WDR19_1st
eIF2A
MIOS_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_RIG_1st
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_WDR11_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_DCAF4
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
16997753
NCBI-ProteinID:
XP_005539475
UniProt:
M1VCY6
LinkDB
All DBs
Position
20:1298368..1299816
Genome browser
AA seq
482 aa
AA seq
DB search
MEQENAEERLINEEYKIWKKNTPFLYDLVLTKALEWPSLTVEWLPERRLAEGHSSVLANL
LLGTHTSDAEQNYLMVAEVRLPYYEGASENAPAPGAPGAGAGKEAEASGCEDTLLSRIEI
RQKINHDGEVNRARYWPKNPFIVATKSPSSAVYLYDLSKHPSKPPTDSRIEAQAILTGHQ
REGFGLAWSPDDRGNLLSCADDMLICQYDVRAVLAGEVASGNGTAPTRSSSERVSNWGGP
PQYGPLRVYTGHKAVVEDVAWCMHNAHMFVSAGDDRQIMLWDTRETSSSRAAATFEAHKA
EVNCVAFSPFNANLLASGSSDSTVALWDIRYLKMKIHSFEAHSDAVQQLVWSPTEETILA
SAAADRRLMIWDLSRIGQEQSPEDAEDGPPELLFVHGGHTAKISDFGWSQNDPWLIASVA
EDNILQVWQVGEHIYADEDEEDEDGAEIESESDPVGARDTPAHGAERSDLAPDDDVDAAL
LE
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggagcaagaaaacgcggaagagcgcttgattaacgaagaatacaaaatatggaaaaag
aacactccgtttctctatgatctggtgctgacaaaggcactagaatggccttctttgaca
gtggaatggcttccagagcgtcggctcgctgaagggcactccagcgtcctcgcgaacctg
ttgcttggcacccacacctccgatgctgagcagaactatctcatggtagcagaagtcagg
cttccgtactatgagggtgcgtccgagaacgcgccggctccgggtgctcctggagcagga
gccggaaaggaggcagaggctagcggctgcgaagacaccctgctcagccgaatcgaaatt
cgacagaagatcaaccacgatggagaagtcaatcgcgctcgctactggccgaagaatccc
ttcatagtggcgaccaagtcaccatcgagcgccgtgtacttgtatgacctttcaaagcat
ccgagtaagccgcctaccgacagccgcattgaagcgcaggcgattctaactggtcatcag
cgggagggtttcggccttgcttggtcgcccgacgatcgagggaacctcttgtcatgcgcc
gatgatatgctcatttgccagtatgacgttcgggccgtcctggctggtgaggtcgcctcc
ggcaatggcaccgctccgacgcgatcgtcatccgaacgtgtgtcaaactggggtggtccg
cctcagtacggcccgctgagagtctacactggccacaaggccgttgtggaagatgtagcc
tggtgcatgcacaacgcccatatgttcgtgtctgccggtgacgaccgccagatcatgctc
tgggatacgcgagagacgagttcgagtcgagcagctgcgacctttgaggcccacaaggct
gaagtcaattgtgtcgctttcagtcctttcaacgcaaatttgctcgcttcgggatccagc
gactctacggtagctttatgggacattcgatatctgaaaatgaaaatacactcatttgaa
gcgcattcagatgctgttcaacagcttgtgtggtcaccgactgaggaaacgattctagcc
tctgcagctgcggaccgtaggctcatgatatgggatcttagtcgaatcggacaggagcag
tcccctgaagacgccgaagatggaccacccgagcttttatttgtccatggtggacatact
gcaaagataagcgatttcggttggagccagaatgatccgtggctcatcgcatctgttgca
gaagataacatattgcaagtttggcaagttggtgaacatatctacgcagacgaggacgag
gaggacgaagacggcgctgaaatcgagtctgaaagcgatccggtgggtgcacgtgacact
cctgctcatggagccgaacgctcggatcttgctcctgacgatgacgtggacgctgcgttg
ttggaatga
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