Cyanidioschyzon merolae: CYME_CMT545C
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Entry
CYME_CMT545C CDS
T00175
Name
(RefSeq) similar to U6 snRNA-associated Sm-like protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03018
RNA degradation
cme03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CYME_CMT545C
09123 Folding, sorting and degradation
03018 RNA degradation
CYME_CMT545C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CMT545C
03041 Spliceosome [BR:
cme03041
]
CYME_CMT545C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CYME_CMT545C
mRNA degradation factors
5'-3' decay
Lsm complex
CYME_CMT545C
Spliceosome [BR:
cme03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CYME_CMT545C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF817
LSM14
Motif
Other DBs
NCBI-GeneID:
16997679
NCBI-ProteinID:
XP_005539498
UniProt:
M1UQ15
LinkDB
All DBs
Position
20:complement(1368469..1368762)
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AA seq
97 aa
AA seq
DB search
MLPVGLVRGAVGQQVTVELKNGKHCTGVLTGVDPWMNLNLESARVTGASRAATTDSVEQA
ASYAALHIRGTMIKLVQLPSKSWEYAQDERKPRQLRE
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atgctgccggtcggactcgtccgcggtgccgttggtcaacaagtcactgtggagctgaaa
aatggaaagcactgcactggcgttttaactggtgttgatccgtggatgaacttgaacttg
gagagcgcacgagtaactggggcttcacgggccgcgacaacggactcggtcgagcaagcg
gcttcctatgctgcgctccatatccgtggaacaatgatcaagctcgtgcaacttccgagc
aaaagctgggagtatgcacaggatgagcgcaagccacggcagctccgcgagtag
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