Cyanidioschyzon merolae: CYME_CMT559C
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Entry
CYME_CMT559C CDS
T00175
Name
(RefSeq) similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily B
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03082
ATP-dependent chromatin remodeling
cme03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
CYME_CMT559C
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
CYME_CMT559C
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cme01009
]
CYME_CMT559C
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cme03021
]
CYME_CMT559C
03036 Chromosome and associated proteins [BR:
cme03036
]
CYME_CMT559C
Protein phosphatases and associated proteins [BR:
cme01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
CYME_CMT559C
Transcription machinery [BR:
cme03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
CYME_CMT559C
SWI/SNF complex
CYME_CMT559C
Chromosome and associated proteins [BR:
cme03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
CYME_CMT559C
PBAF complex
CYME_CMT559C
SWI/SNF complex
CYME_CMT559C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
GATA
zf-C4_ClpX
Motif
Other DBs
NCBI-GeneID:
16997645
NCBI-ProteinID:
XP_005539508
UniProt:
M1VIN6
LinkDB
All DBs
Position
20:1411644..1412678
Genome browser
AA seq
344 aa
AA seq
DB search
MVQSVNLDTGQAEEFELKQGQCGAAQEPLIPIRIDVQWNDARVVDAFLWNQYEERLTPET
FAPHLLRDLQQPMELANGVASAIREQIEQYSPFEHELFADRSELRLLFTLDVRIGNIQLQ
DTFEWDALSFESDPEQFSRMLCRELGLGTEFSTAIAHAIREQLQDVWAGVAYSQKSILES
VHPRITIRDGEDWELPGPAVRVLSKEELEEVERREDRSARAMRRSQRKSGLSWGLAPAPT
LRERSVDSTVFFGPRQAVAEERPKRRRNQNPVDSEGRPVVACSHCGRHPSKTPLMRVGPR
GLKNEICNSCGLYYRKYGELPTHYKGYPIGPGYPPPPGSQEHDA
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atggtgcagtcggtaaacctggatacggggcaagcggaggaattcgagttgaagcagggg
cagtgcggtgccgcacaggaaccgctcataccaatccgcatcgatgtgcagtggaacgat
gcccgtgttgtcgatgcctttctttggaaccaatatgaagaacgcctcacaccggagacg
tttgccccacacctgctccgggatctgcagcaacctatggagcttgcaaacggtgttgcg
tccgccattcgcgagcagatagagcagtactctccctttgaacacgagctattcgcggat
cgttccgagttgcgcctgctctttaccttggatgtgcgaatagggaatatccagctacag
gatacctttgagtgggatgcgctctcattcgaaagcgatcccgagcagttttcgcggatg
ctctgtcgagaactgggccttggaacagagtttagcaccgccatcgcccatgcgattcgt
gaacagttgcaggacgtttgggcgggtgtcgcttactcccaaaaaagcattctggaatcc
gtgcatccgcgtataacgattcgggatggcgaagattgggagcttccgggtcccgcggtg
cgcgtgctctccaaggaggaactcgaagaggtggagcggcgtgaggatcgcagtgctcgc
gccatgcgtcgcagtcagcgcaaatccgggctgagctggggcctggccccagcgccaacg
ctccgggagcgctccgtggacagcactgtgtttttcgggccgcggcaagccgtggccgaa
gagcgccccaaacggcgtcgcaaccagaatcctgttgactctgagggtcggcccgtcgta
gcctgcagccattgtggtcgacatccgtcaaaaacgcctttaatgcgagttggaccacgt
ggtctcaagaacgaaatctgcaatagttgtggcctgtactatcgcaaatatggagagctt
cccacgcattataagggctatcccattgggcctgggtatccgccacctcctggaagtcag
gaacatgatgcataa
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