Caminibacter mediatlanticus: FE773_00055
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Entry
FE773_00055 CDS
T05985
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cmed
Caminibacter mediatlanticus
Pathway
cmed03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cmed00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FE773_00055 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmed03021
]
FE773_00055 (rpoB)
03400 DNA repair and recombination proteins [BR:
cmed03400
]
FE773_00055 (rpoB)
Enzymes [BR:
cmed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FE773_00055 (rpoB)
Transcription machinery [BR:
cmed03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FE773_00055 (rpoB)
DNA repair and recombination proteins [BR:
cmed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FE773_00055 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QCT93647
UniProt:
A0ABX5V5S2
LinkDB
All DBs
Position
complement(13989..18128)
Genome browser
AA seq
1379 aa
AA seq
DB search
MLNQLKSANRLRLDFSKIPQILDIPNLLHLQQNSFKDFINIEEPEKSGIHKVFKSMFPIT
DAQNRITLEYVGIEFKKPKYTVRECMEKGLTYSIPIKIKVRLIVHERDEKTGEKIGIKDI
KEQTLFIRDIPLMTERTSFIINGVERVIVNQLHRSPGVIFKQEEAQNSNKLLYSAQIIPD
RGSWVYFEYDVKDVLYVRVNKRRKVPVTILLRAMDYSKEDILKLFYPILDIIVKNGKFLM
PSTQLEAGKLDYDLKDEDGNIIIPAGKRITRRKLKEIQEKYEYVEYPLELLFDRHLAEPI
YDPLTGEVLFDTLTILNEVKLKKIVESQISEFKIVNDLADGVDDGILRAFHQDIETLKIL
KQTEGIENENDLARIRIYKVMRPGEPATPQTAKELFDKLFFDPERYDLTKVGRMKMNHKL
GLNVPDDVTVLTYQDIIKTIQYLIGVRNGIGQIDDRDHLGNRRIRSIGELLANKLQDGLA
KMQKTIKDKMTTITNVNELLPMDLVNTKLVTTTILDFFATGQLSQFMDQTNPLSEVAHKR
RLSALGEGGVTRERAGFEIRDVHPSHYGRICPIETPEGQNIGLVNTLSTYAKVNEFGFIE
APYRVVKDGRVTNEIVYLTATQEEEKVIAPASVKIDEQTGEIIDDLIEARKDGEIVLVDK
KEVDLYDLNPKMIVGVGASLIPFLEHDDANRALMGSNMQRQGVPLLRSEAPIVGTGIEKY
VARDAWQIVKAKRDGKVIKVDAKNIYILGEDENGAYIDHYGLEKYLRTNQNTCFDQRPIV
KVGDVVKAGDVIADGPNMDNGEIALGKNVLVAFMPWNGYNFEDAIVLSERIIRDDVYTSV
HIYEEVCEVRELKHGLEELTADIPGVKPEYLSHLDESGIVKVGTYVKPGMILVGKISPKG
DVKPTPEERLLKSIFGDKSGHVVNSSLYAPASMEGVVIDVKVYTKKGYELDERAKKAYEE
EKQKIEDVYKNKLAIIDEEEMIALTTLLSSKPLIKEVALNSKIFKEGEKIPKEELQNINK
FLLLSLVEYYDEETKREFEEIKSKYQKEKENIRKEYDEKIEVLERDDILPNGVAKMVKVY
IANKRKIKVGDKMAGRHGNKGIVSIIVPEEDMPYMEDGRTVDVVLNPLGVPSRMNIGQIL
EVHLGLVGKKLGEQIEEILKEKQDDMMNKLRAKMKEIVKVAHFGEHFEKFLDSLTNEELL
KYARDWAKGVKFSTPVFEGVTEEEFKKLFEMAGIPEDGKMQLYDGRTGEPIKERVNVGYM
YMMKLHHLVDDKVHARSIGPYSLITQQPVGGKALFGGQRFGEMEVWALEAYGAAYNLKEM
LTTKSDDVEGRNKAYRALTRGENVPIEGLSETFFVLSKELRALGLDLEFYKKEEDNEEI
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaccaattaaaatcagctaatagattaagacttgatttttcaaaaatacctcag
atattagatattccaaatttattacatcttcaacaaaattctttcaaagattttataaat
attgaagagccagaaaaaagtggaattcataaagtgtttaagtcaatgtttccaattaca
gatgcacaaaatagaattactcttgaatatgtaggaattgagtttaaaaaaccaaaatat
actgttagagaatgtatggaaaaaggtcttacatattcaatacctataaaaataaaagtt
agacttatagttcatgaaagagatgaaaaaactggtgaaaaaattggaataaaggatata
aaagaacaaactctatttattagagatattcctttaatgacagaaaggacaagttttatt
ataaatggagttgagagagttatagtaaatcaacttcatagaagtccaggtgttatcttt
aaacaagaagaagctcaaaattcaaataaacttttatattcagcacaaattattccagat
agaggtagttgggtttattttgaatatgatgtaaaagatgtattatatgttagagttaat
aaaagaaggaaagtacccgttactatacttcttagggcaatggattattcaaaagaagat
attttaaaactattttatccaattttagatattattgttaaaaatggtaagtttttaatg
ccatctacacagcttgaagctggaaagcttgattatgatttaaaagatgaagatggaaat
attataattccagcaggaaaaagaattacaagaagaaaactaaaagaaattcaagaaaaa
tatgagtatgtagaatatccacttgaacttctttttgatagacatcttgcagaaccaatt
tatgatccattaacaggagaagttttatttgatacattaactatactcaatgaagtaaaa
cttaaaaaaatagtcgaatctcaaattagtgagtttaaaattgttaatgacttagctgat
ggtgttgatgatggaattttaagagcatttcatcaagatattgaaactttaaaaatttta
aaacaaacagaaggtattgaaaacgaaaatgatttagcaagaattagaatttataaagta
atgagaccaggtgaacctgcaacgcctcaaacagcaaaagagttatttgacaaactattt
tttgacccagaaagatacgatttaacaaaagttggtcgtatgaaaatgaatcataaatta
ggtcttaatgttccagatgatgttacagttttaacatatcaagatattattaaaacaatc
caatacttaattggagttagaaatggtattggacaaatagatgatagagaccatttagga
aatagaagaattagaagtattggtgaacttcttgctaataaacttcaagatggtcttgca
aaaatgcaaaaaacaattaaagataaaatgacgacaattacaaatgtaaatgaattgctt
ccaatggatttagttaatacaaaacttgttacaacaactattttagatttctttgcaact
ggacaactatctcaatttatggaccaaacaaatccactaagtgaagttgctcacaaaaga
agacttagtgcgcttggagaaggtggagtaacaagagagagagctggatttgaaataaga
gacgtccatccaagtcattatggaagaatttgtccaattgaaactcctgagggtcaaaat
attggacttgttaatactttatcaacttatgcaaaagttaatgagtttggatttattgag
gctccatatagagttgtaaaagatggtagagttacaaatgagatagtttatcttacagct
acacaagaagaagaaaaagtaattgcaccagcaagtgtaaaaatagatgaacaaactggt
gaaattattgatgatttaattgaagcaagaaaagatggagagattgtattagttgataaa
aaagaagttgacctttatgaccttaatccaaaaatgattgttggggttggagcaagtcta
attccattcttagaacatgatgacgcaaatagggctttaatgggttctaacatgcagcgt
caaggtgtaccacttctaagaagtgaagctccaattgttggtactggtattgaaaaatat
gtagcaagagatgcatggcaaattgtaaaagcaaaaagagatggaaaagttatcaaagtt
gatgctaaaaatatttatattttaggcgaagatgaaaatggagcatatattgaccattat
ggacttgaaaaatatttaaggactaatcaaaacacttgttttgaccaaagaccaattgtt
aaagttggagatgtagtaaaagcaggtgatgttattgcagatggtccaaatatggataat
ggagaaatagctcttggtaaaaatgttttggttgcatttatgccttggaatgggtataac
ttcgaggatgctattgttttaagcgaaagaattattagagatgatgtttatacatctgtt
catatttatgaagaagtttgtgaagtaagagagctaaaacacggacttgaagaattaaca
gctgatattccaggagtaaaacctgagtatttatctcatttagatgagagcggaattgta
aaagttgggacatatgtaaaacctggtatgattttagttggaaaaatttcaccaaaaggt
gatgtaaaaccaacaccagaagaaagactacttaaatcaatttttggtgataaatctgga
catgtagtgaattcttcattatatgcacctgcaagtatggaaggtgttgttattgatgtt
aaagtttatactaaaaaagggtatgaacttgatgaaagagcaaaaaaagcatatgaagaa
gagaaacaaaaaatagaagatgtatacaaaaataaattagcaattattgatgaagaagaa
atgatagctttaactactcttttatcatctaaacctttaattaaagaagttgcattaaat
tctaaaatatttaaagagggtgagaaaataccaaaagaagaacttcaaaatattaataaa
tttttacttttaagtttagttgaatattatgatgaagaaacaaaaagagaatttgaagaa
attaagtcaaaatatcaaaaagaaaaagaaaatattagaaaagagtatgatgaaaaaata
gaagtacttgaaagagatgatatcctgccaaatggtgtagctaaaatggtaaaagtttat
attgctaataaaagaaaaataaaagttggtgataaaatggcaggaagacatggaaacaaa
ggtattgtaagtattattgtcccagaagaagatatgccatatatggaagatggaagaact
gttgatgttgtattaaatcctcttggggttccatcaaggatgaatattgggcaaatttta
gaagtacatttaggtcttgttggtaaaaaacttggagagcaaattgaagagattttaaaa
gaaaaacaagatgatatgatgaataaattaagagctaaaatgaaggaaatagttaaagtc
gctcattttggtgagcattttgaaaaattccttgatagtttaactaatgaagagttatta
aaatatgcaagggactgggcaaaaggagttaaattctcaacacctgtatttgaaggtgta
acagaagaagaatttaaaaaattatttgaaatggctggaattccagaagatggaaaaatg
caactttatgatggaagaacaggtgaaccaattaaagagagagtaaatgtaggttatatg
tatatgatgaaattacatcaccttgttgatgataaagtacatgcaagaagtattggtcca
tattcacttattactcaacaaccagttggtggtaaagcactatttggtggacaaagattt
ggggaaatggaagtttgggcacttgaagcatatggtgctgcttataatcttaaagagatg
ctaacaacaaaatcggatgatgttgaaggaagaaataaagcatatagagcattaacaaga
ggtgagaatgtaccaattgaagggcttagtgagacattttttgtactaagtaaagagctt
cgtgcacttgggcttgatttagagttttacaaaaaggaagaggacaatgaagagatttaa
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