Caminibacter mediatlanticus: FE773_02255
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Entry
FE773_02255 CDS
T05985
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cmed
Caminibacter mediatlanticus
Pathway
cmed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FE773_02255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmed03019
]
FE773_02255
03009 Ribosome biogenesis [BR:
cmed03009
]
FE773_02255
Enzymes [BR:
cmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FE773_02255
Messenger RNA biogenesis [BR:
cmed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FE773_02255
Ribosome biogenesis [BR:
cmed03009
]
Prokaryotic type
rRNA helicases
FE773_02255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
SecA_DEAD
NAT10_TcmA_helicase
DeaD_dimer
CNOT11
AAA_30
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QCT94040
UniProt:
A0ABX5V6Z3
LinkDB
All DBs
Position
399907..401289
Genome browser
AA seq
460 aa
AA seq
DB search
MTFKDFKLKEEIIKRLEEIGFEKPSPIQEKAIPVILEGKDVVAQAQTGTGKTAAFGLPIL
SKIKKDEKALIITPTRELAIQVSEEIFRFGKYLGVHTATVYGGSSYNRQIKHIENSQFII
ATPGRLLDLLKSGKIDIAPKYVILDEADEMLDMGFLDDIKEIFKFVPSNRQTLLFSATMP
EPIKNLAKTILKNPEFITITRKQVTNENIKEYFYVIDEFERKDALIRLIDYKNPTKSIVF
CRTKKDVDDIAEFLSGAGFDAKGLHGDMDQRKREEVIRGFKSDRIEILVATDVAARGLDV
NNVSHVFNYHLPLDPESYVHRIGRTGRAGKEGMAISLVTPHEFRALNRIQKISKIILKEI
PTLADVKDKEIQKIIDKLSNIDPTPKSIEIIEELQNEYDLMTIAIKLASMLFDKESDGKD
RIGKSIKEAKRLIEREKSNKNRDRNNRRNRGRGFNRGRKR
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagattttaaattaaaagaagaaattataaaaagattagaagagattggt
tttgaaaaaccttcaccaattcaagaaaaagctattccagtgattttagaaggtaaagac
gtggtggctcaagcacaaactggtactggaaaaacagcagcatttggacttcctattctt
tcaaaaataaagaaagatgaaaaagcattaattattactccaacacgtgaacttgctatt
caagttagtgaagagatttttagatttggaaagtatttaggagtgcatactgcaacagtt
tatggaggaagtagttataatagacaaatcaagcatattgaaaattctcagtttattatt
gctacacctggaagacttcttgatttgctaaaatctggtaaaattgatatagctccaaaa
tatgtgattttagatgaagctgatgagatgcttgatatgggatttttagatgatataaaa
gagatttttaaatttgtaccaagtaatagacaaactcttttatttagtgcgacaatgcct
gagcctattaaaaatttagcaaaaacaattcttaaaaatcctgaatttataactatcaca
agaaaacaagtaacaaatgaaaatattaaagaatatttttatgtaattgatgaatttgag
agaaaagatgcacttattagacttatagattataaaaacccaacaaaatctattgtgttt
tgtaggactaaaaaagatgtagatgatattgctgaatttttaagtggggctggatttgat
gctaagggacttcatggagatatggaccaaagaaaaagagaagaagtaattagaggtttt
aaaagcgatagaatagaaattttagtggctactgatgttgctgcaagaggtcttgatgta
aataatgtttcacatgtatttaattaccacttacctcttgaccctgagagttatgtccat
agaattggaaggactggtagggctggaaaagaagggatggcaatttcacttgtaactcct
catgaatttcgagcgttaaatagaattcaaaaaatatctaaaattattttaaaagaaatt
ccaacacttgctgatgttaaagataaagaaattcaaaaaataatagataaactctcaaat
attgatccaactccaaaatcaattgaaataattgaagagttgcaaaatgaatatgactta
atgacaattgctataaaacttgcaagtatgctttttgataaagaatctgatggtaaagat
agaattggtaaaagtattaaagaagctaaaaggcttattgaaagagaaaaatcaaataaa
aatagagatagaaataatagaagaaatagaggaagaggttttaatagaggaagaaaaaga
taa
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