Caminibacter mediatlanticus: FE773_02330
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Entry
FE773_02330 CDS
T05985
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cmed
Caminibacter mediatlanticus
Pathway
cmed03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FE773_02330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmed03400
]
FE773_02330
Enzymes [BR:
cmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FE773_02330
DNA repair and recombination proteins [BR:
cmed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FE773_02330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
AAA_30
Helicase_RecD
TsaE
MGS
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QCT94054
LinkDB
All DBs
Position
414129..417074
Genome browser
AA seq
981 aa
AA seq
DB search
MQAKVYEYLQNNKTNIITSNLKEALNIGEVYKYLDLNAVVFPDFRAVLGDDLRSFRKEIF
ELNNALFKFYNENAYFISPYSTIMKKLPVKKYYKSIDLNFGDNIDLEEIKKTFILWGYER
VDIVSEKGEVSFRGDILDIWPINTKKPIRISLFDIEIESIREFDETTQKSIDEIESIKII
PAIAALDEKEYNEILEKIERSEYSVFYKDFYSLSFWFLEREFLSDFVLLNDLSEEINEYK
EFYKEFNEAVLNKEIIPNGKCKDIKWKIEKGKIKIEDEVYDEKTPLEIVAKNEVLLREYE
LDDFVKFKRPLVRWIKNSAYLNIKCPEKIVISLNTPEFEKVKRTNLVLDELKKGDFVVHI
DHGIGKFLGLKKMEVLGKIGEFAEVLYANDDKLLLPVENLDKLERYIAPGGVVPQLDKLG
KGTFAKKLTKIKEKVYAIAADIVKLAAKREVSSPIKLNFEGVKDFIKKAPFTHTNDQLKA
INEIINDFKTKIMDRLLTGDVGFGKTEVAMVASFIVANSGYQVAVIAPTTILVNQHYESF
KERFKETNIKIAKLDRFTSSKEKKEIIEKLKNGEIDILISTHAGLNVEYKNLGLVIIDEE
HKFGVKQKEKLKELSDKVHMLYMSATPIPRTLNMALSQIKSISNLEEAPKGKQNTKTFVK
EWNENLIKEAILREIRRGGQIFYIYNNIAYIEHKKKELLDILPNLRILTLHAKMTPNQIE
KGLVDFINKKYDLALTTTIVESGIHIPNVNTVIVENADKFGIADLHQIRGRVGRGKHEGY
AYFLVKNKKELSEDAKKRLLALEENSFLGSGQVLAMKDLEIRGGGNLLGAEQSGQIKGIG
YSMYLKLLEDTLKEMLGKKEEKEDVEVKLNINAYISNELIKEDRLRLDLYKRLAKCENLK
EVYEIEKEIVDRFGKIDTPTQNFIEKIKIKVLAKEKGIKSISNYGQNISIIFNNDKKELI
KAEAKDDAIILETILKNMSSI
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagcaaaagtttatgaatatttacaaaataacaaaacaaatataattacaagtaat
ttaaaagaagcattaaatattggagaagtttataaatatttagatttaaatgcagtagtt
tttccagattttagagcagttttaggagatgatttaagaagttttagaaaagagatattt
gaattaaataatgcactttttaaattttataatgaaaatgcatattttatctctccatat
tctactattatgaaaaaacttcctgttaaaaaatattataaaagtatagatttaaatttt
ggagataatattgatttagaagagatcaaaaaaacttttattttatggggatatgagaga
gttgatattgttagtgaaaaaggagaagttagttttagaggagatattttagatatttgg
ccaattaatactaaaaagccaattagaatttctctttttgatatagaaattgagagtatt
agagaatttgatgagactactcaaaaaagtattgatgaaattgagagtataaaaattatt
ccagcaattgctgcattagatgaaaaagaatataatgaaattttagaaaaaattgaaaga
agtgaatatagtgttttttataaagatttttattctctttctttttggtttttagaaaga
gaatttttaagtgattttgtattacttaatgacctaagcgaagagattaatgaatacaaa
gaattttataaagaatttaatgaagcagtcttaaataaagagataattcctaatggaaaa
tgcaaagatattaaatggaaaattgaaaaaggtaaaattaaaattgaagatgaagtttat
gatgagaaaactcctcttgaaattgttgcaaaaaatgaagttttacttagagaatatgag
ttagatgattttgtaaaatttaaaagaccacttgttagatggattaaaaattcagcttat
ttaaatataaaatgcccagaaaaaatagttatttcgcttaatactcctgagtttgagaaa
gttaaacgcacaaatttagttttagatgaactgaaaaaaggagattttgtagtccatatt
gaccatggaattgggaaatttttaggtcttaaaaaaatggaagtgttaggtaaaatagga
gaatttgctgaggttttatatgcaaatgatgataaattgcttttgccagttgaaaatctt
gataaattagaaagatacattgcaccaggtggagttgtgcctcaacttgataaacttggt
aaaggtacttttgctaaaaaactaactaaaattaaagaaaaagtttatgcaattgcagca
gatattgtaaaacttgctgcaaaaagagaagttagtagtccaattaagttaaattttgaa
ggagttaaagattttataaaaaaagctccatttactcatacaaatgaccaattaaaagca
attaatgagataattaatgattttaaaactaaaattatggatagattacttaccggtgac
gttggttttggtaaaacagaagttgcgatggttgcaagttttatagttgcaaatagcgga
tatcaagtagctgtaattgcaccaactactattttagtaaatcaacattatgaaagcttt
aaagagagatttaaagagacaaatataaaaatagcaaaacttgatagatttacttcatct
aaggaaaaaaaagagataatagaaaaattaaaaaatggtgaaattgacatccttatttct
actcatgcaggattaaatgttgagtataaaaatttaggacttgtaattattgatgaagag
cataaatttggagtaaagcaaaaagagaaattaaaagaattaagtgataaagttcatatg
ctttatatgtcagcaactccaattccaagaactcttaatatggcactctcacaaataaaa
tcaatttcaaaccttgaagaagcaccaaaaggaaaacaaaatactaaaacttttgtaaaa
gagtggaatgaaaacttaataaaagaagcaattttaagagagattagaaggggagggcaa
attttttatatttataacaatattgcttatatcgaacataagaaaaaagagcttttagat
attttaccaaatttaagaattttaactcttcatgcaaaaatgactccaaatcaaatagaa
aaaggtttagttgattttataaataaaaagtatgatttggctttaactactacaattgtt
gagagtggaattcatattccaaatgtaaacactgtaattgtagaaaatgcggataaattt
ggaattgctgatttacatcaaataagaggaagagttggaaggggaaaacacgaaggttat
gcttactttttagttaagaataaaaaagagttgagtgaagatgcaaaaaaaagattactt
gcacttgaagagaattcatttcttggaagtggtcaggttttagcgatgaaagatttagaa
attagagggggtggtaatttacttggggctgaacaatctggtcagattaaaggtattgga
tattctatgtatttaaaacttcttgaagatactttaaaagagatgcttggaaaaaaagaa
gaaaaagaggatgtagaggtaaaattaaatattaatgcctatataagtaatgaattgata
aaagaagatagattaagactggatttatataaaagacttgctaagtgtgagaatttaaaa
gaagtttatgaaattgaaaaagagattgttgatagatttgggaaaatagatactcctact
caaaactttattgaaaaaattaaaataaaagttttagcaaaagaaaaaggcataaaatca
atttcaaattatggacaaaatatctcaattatttttaataatgataaaaaagagttaata
aaagctgaggcaaaagatgatgcaataattcttgaaactatactaaaaaatatgagttca
atttaa
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