Caminibacter mediatlanticus: FE773_06635
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Entry
FE773_06635 CDS
T05985
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cmed
Caminibacter mediatlanticus
Pathway
cmed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FE773_06635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmed03019
]
FE773_06635
03016 Transfer RNA biogenesis [BR:
cmed03016
]
FE773_06635
Enzymes [BR:
cmed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FE773_06635
Messenger RNA biogenesis [BR:
cmed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FE773_06635
Transfer RNA biogenesis [BR:
cmed03016
]
Prokaryotic type
tRNA degradation factors
FE773_06635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_2
PTCRA
S1_RRP5
KH_DEAH11_2nd
PhosphMutase
Motif
Other DBs
NCBI-ProteinID:
QCT94871
UniProt:
A0ABX5VDI3
LinkDB
All DBs
Position
complement(1230032..1232209)
Genome browser
AA seq
725 aa
AA seq
DB search
MSCEVDIKINGKEQKFILNKVARQADSSIWWQEGNTVMLATLTYNPDEVIEEDFVPLVVQ
YVERAYAVGKIPAGFVKREQKPGDFETLTARIVDRSLRPLFPKNFGYDTIITIMALSADE
DSDLQVAAMNAAAACMYMSSLPFAKMVHGVRITRIDGEIIFNPTLSQLEKGDFNLFVTGT
KDELLMIEYASQGQEEVEIIPVEDIMLDGVPVENTIIKYKTNEISEDELVEILKKAQEKI
KEGAETYESALKNFVKEKIEFVERKEVDLTPYIKLIKEKYIDELKEIIKHLSKSERDYLL
KEFARKIAKTLNEEDNFEAILKAVKEVKREIVRGMILYEGIRADGRKLDEIRPISIETNV
LPRAHGSCLFTRGQTQALAVATRGGDMDAQVYANLTDKEEKLEKFMLHYNFPAFAVGEAV
RLGPPSRRELGHGNLAKRAIEPLLDPEFDETVRVVSEILESNGSSSMATICASSIALKAA
KVPLLKLAAGIAMGLVSEGEKYAILTDIMGLEDHDGDMDFKVAGTWDGITAMQMDIKLGG
IALDILKEALYQAREARAFILEKMENAVENIKYNEDVLPKSLSFKVEPDRIIDIIGTAGK
TVKEIIAKFGITIDLDRETGKVKIFGDSHEQMQAAKDYILNVICKEDTPKIPEFEIGSIL
EGVIKRKVPFGLFVELAPDVEGLLHISKLNGKSLDDFEIGDKIKVKVLSQSGFKIELALV
EDEDV
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgagttgtgaagttgatattaaaattaatggtaaagaacaaaaatttattttaaataaa
gttgcaagacaagcagatagtagtatttggtggcaagaaggcaatactgtaatgcttgca
actttgacatataatcctgatgaagttattgaagaagattttgtgccacttgtggtacaa
tatgtagaaagagcttatgcagtaggaaaaattccagcaggatttgtaaaaagagagcaa
aaaccaggggattttgaaactttaactgcaagaattgtagatagaagtttaagacctctt
tttccaaaaaattttggttatgatactattattacaattatggcacttagtgcggatgaa
gatagtgacttacaagtagctgctatgaatgcagcagcagcatgtatgtatatgagtagt
ttgccatttgcaaagatggtccatggagttagaattacaagaattgatggagagattatt
tttaatccaacattatctcaacttgaaaaaggagattttaatctttttgtaacggggact
aaagatgaacttttaatgattgaatatgcttcgcaaggtcaagaggaagttgagattatt
cctgttgaagatattatgcttgatggtgtgcctgttgagaatacaattattaaatataaa
actaatgaaattagtgaagatgaattagttgaaattcttaaaaaagcacaagaaaaaatt
aaagaaggggctgagacttatgaaagtgcccttaaaaattttgtaaaagagaaaattgaa
tttgttgaaagaaaagaggttgatttaactccttatattaaattaattaaggaaaaatat
atagatgagttaaaagaaattataaagcatttaagtaaaagtgagagagattatttatta
aaagagtttgcaagaaaaattgctaaaactttaaatgaagaagataattttgaggctatt
ttaaaagcagtaaaagaagttaaaagagaaattgtaagaggtatgattctttatgaaggg
attagagctgatggaagaaaacttgatgaaataagaccaattagtattgaaactaatgtt
ttaccaagagctcatggtagttgtttatttacaagaggtcaaacacaagccttagcagtt
gcaactcgtggtggtgatatggatgctcaggtttatgcaaatttaacagataaagaagaa
aaacttgaaaaatttatgcttcattataacttcccagcttttgcagtgggtgaggctgta
aggcttggacctccaagtagaagagaacttggtcatggaaacttagcaaaaagggctatt
gagcctttacttgaccctgaatttgatgagactgtaagggttgtaagtgaaattttagag
agtaatggaagtagttcgatggcaactatttgtgcaagttctattgcacttaaagcagca
aaagtaccacttttaaaacttgcagctggtattgctatgggattagttagtgaaggtgaa
aagtatgctattttaactgatattatgggacttgaagaccacgatggagatatggatttt
aaagttgctggaacatgggatggtataacagcaatgcaaatggatataaaacttggtgga
atagcacttgatattttaaaagaagcattatatcaagcaagagaagcaagagcatttatt
ttagaaaaaatggaaaatgcagtagaaaatattaaatataatgaagatgtgcttccaaaa
tcattaagttttaaagtagagccagataggataatagatataataggcactgctggtaaa
actgtaaaagagattattgcaaaatttggaatcactattgatttagatagagaaacagga
aaagttaaaatttttggcgattctcacgagcaaatgcaagctgcaaaagattacatttta
aatgttatttgtaaagaagatactccaaaaattcctgagtttgaaattggttcaattctt
gaaggtgtaattaaaagaaaagtaccttttggtttgtttgtagagcttgcacctgatgta
gaaggacttttacatattagtaaattaaatggtaaaagtttagatgattttgaaatagga
gacaaaataaaagtaaaagttttatctcaaagtggttttaaaattgaacttgctttagta
gaggatgaagatgtttga
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