Chenggangzhangella methanolivorans: K6K41_21590
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Entry
K6K41_21590 CDS
T07462
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cmet
Chenggangzhangella methanolivorans
Pathway
cmet02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cmet00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K6K41_21590 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmet03021
]
K6K41_21590 (rpoD)
Transcription machinery [BR:
cmet03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K6K41_21590 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Phage_DsbA
DUF4168
Dict-STAT-coil
Motif
Other DBs
NCBI-ProteinID:
QZN99343
UniProt:
A0A9E6UMM6
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All DBs
Position
4344325..4346316
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AA seq
663 aa
AA seq
DB search
MATKLQAKDEAETGAPETEAGPLLDMNDQAVRRMIKAAKKRGYVTNDELNEVLPSDQNTA
DQIEDIMSMLNEMGINVIESEDAEDKEREEGDDDAEESGGEIVEAPRQQAVTVTQKSEPT
DRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDEL
NDAKILLREIIDLEATYAGPDAKNNAGQPAAEGEESEGGEEGESESENAPEGDLDDDDME
NNVSLSAMETELKPKVLETFDAIADDYKKLRRLQDQNVENRLQNKTLSPAQDRKYKKLKD
DIVVNVKSLSLNQNRIDALVEQLYDINKRLVALEGRLLRLADSYGVDRVDFLKQYQGYEL
DPNWIRRVAGLGTKGWKGFVGSEKDLIKDIRGDIHNLATETGLEIQEFRRIVQMVQKGER
EARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY
ATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMP
LEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLAS
LTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSF
LDN
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaagctgcaagcgaaggacgaggccgagaccggagccccggagaccgaggcc
ggtcctctgctcgacatgaacgaccaggccgtccgccggatgatcaaggccgcgaagaag
cgcggctatgtcaccaacgacgagctgaacgaggttcttccctccgaccagaacacggcg
gaccagatcgaagacatcatgtcgatgctcaacgagatgggcatcaacgtgatcgagtcc
gaggacgccgaggacaaggagcgcgaggagggcgacgacgacgccgaggagagcggcggc
gaaatcgtcgaggctccgcgccagcaggccgtcacggtcacgcagaagtccgagccgacc
gaccgcaccgacgatccggtgcgcatgtatctgcgcgagatgggctcggtcgagctgctc
tcgcgcgagggcgagattgcgatcgccaagcgcatcgaggccggccgcgaggcgatgatc
gcgggcctctgcgaaagcccgctgaccttccaggccatcatcatctggcgcgacgaactg
aacgacgccaagatcctgctgcgcgagatcatcgacctcgaggcgacctacgccggccct
gacgcgaagaacaacgccggccagcccgccgccgagggcgaggagtccgaaggcggcgag
gagggcgagtcggagagcgagaacgcgcccgagggcgatctcgacgacgacgacatggag
aacaacgtctcgctctccgccatggagaccgagctgaagccgaaggtgctcgagaccttc
gacgccatcgccgacgactacaagaagcttcgccgcctgcaggaccagaacgtcgagaac
cgtctccagaacaagacgctctcgccggcccaggaccgcaagtacaagaagctcaaggac
gacatcgtcgtcaacgtgaagtcgctgtcgctcaaccagaaccgcatcgacgcgctggtg
gagcagctctacgacatcaacaagcggctcgtcgcgctcgagggccggctgctgcggctc
gccgactcttacggcgtcgatcgcgtcgacttcctgaagcagtaccagggctacgagctc
gatccgaactggatccgccgcgtggcgggcctcggcaccaagggctggaagggtttcgtc
ggctccgagaaggacctgatcaaggacatccgcggcgacatccacaatctcgcgaccgag
acgggcctggagatccaggagttccgccgcatcgtccagatggtgcagaagggcgagcgc
gaagcccggcaagccaagaaggagatggtcgaggccaaccttcgcctcgtgatctcgatc
gccaagaagtacaccaaccgcggcctgcagttcctggacctgatccaggagggcaacatc
ggcctgatgaaggcggtcgacaagttcgagtaccgccgcggctacaagttctcgacctac
gccacctggtggatccggcaggcgatcacccgctcgatcgccgaccaggcgcgtacgatc
cgcatcccggtgcacatgatcgagacgatcaacaagatcgtccgcaccagccggcagatg
ctgcacgagatcggccgcgagccgacgcccgaagagctcgccgaaaagctcgcgatgccg
ctcgagaaggtccgcaaggtcctcaagatcgccaaggagccgatctcgcttgagaccccg
atcggcgacgaggaggattctcacctcggcgacttcatcgaggacaagaacgcgatcctg
ccgatcgacgccgcgatccagtcgaacctgcgcgagaccacgacgcgggtgcttgcctcg
ctcaccccgcgcgaggagcgcgtgctgcgcatgcgcttcggcatcggcatgaacaccgac
cacacgctcgaagaggtcggccagcagttctcggtgacccgcgagcgcatccgccagatc
gaggcgaaggcgctgcgcaagctcaagcacccgagccgctcgcggaagctcaggagcttc
ctcgacaactga
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