Corynebacterium macginleyi: GWO64_003295
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Entry
GWO64_003295 CDS
T08010
Name
(GenBank) translation initiation factor IF-2 N-terminal domain-containing protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cmf
Corynebacterium macginleyi
Pathway
cmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GWO64_003295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmf03019
]
GWO64_003295
03009 Ribosome biogenesis [BR:
cmf03009
]
GWO64_003295
Enzymes [BR:
cmf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GWO64_003295
Messenger RNA biogenesis [BR:
cmf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GWO64_003295
Ribosome biogenesis [BR:
cmf03009
]
Prokaryotic type
rRNA processing factors
GWO64_003295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
TcdA_TcdB
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QRJ58425
LinkDB
All DBs
Position
627105..630905
Genome browser
AA seq
1266 aa
AA seq
DB search
MAAQNSQGTTENLQAAAALAQRIDLSELKDKTRVYAMAKKLGLSSRRLVAQLKEMGLNKT
AQSSITRAEAGDLFAALERQAGAAEAVQSLAADENPADQKPESKAKTTKRPRRTRKATKK
SAPAAKKEPTQPDTAETDNAPAENTAADVEEEKSLRYRVRKNVDNEISQIEEKVDASLVK
SALPDVKQALDHLPDPEPTKAPARAADTDAAEAGTATGSAGDLTGTVNPAKLREVLAEAG
EDLDDDYFAPRMVPQAETDEDSATYDFAPLFMPPVQQAATELHEATDIAAITETTDVTDP
AEDAESDGPEASHGAWRGASDKRRRGRRGTSRGRGGYDNPPGKAADKELEFIDEPKAIRG
STRIEAQKRRREELREKGRERQHIVSQAEFLARREAVERTMVVRDKQREDGAGIVTQVGV
LEDDLLVEHFVTTDAQASLIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYASEIDWRKT
KLHGRSRKVENTLKSGDQIVVQVAKDSIGHKGARLTTRISLAGRYLVYVPGGRSAGISRK
LPAPERKRLKEILRRVVPGDGGTIIRTAAENVPEKAIATDVQRLHNRWEDISAQAEKEKS
SKGAKPVTLYEEPNMLIKVVRDLFNEDFHRLIVDGKRSFNTVNAYVESMAPDLADRVERY
QSNEHGGQDAFAAYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGN
LEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRLKEALGRDRTRH
QVSEVTSLGLVQMTRKRLGTGLVETFSTECEHCRGRGIIIHEYPVDELEDSHSSHHSHGS
PRAHKKPANDPQQHPAAVAMHEHEDADEHPEKNDQKGQKNHTVRRSASQSRKYQKTNGPL
YGSDDKQSPSLEELVANVVVYEEPAECEQEAPQKRTENPSGNRDQRGRGEGKQKKRRRVQ
KRSAVTEIEAIAYAAAENAADSDEVQEFNSYVPDGQEKLATEEKRTQRGKKRRRATRTSP
ASRRAQAQPSHGQWGAEEKQAVAPDAAEKTYEEAVAEFEASPRRKRRTRGNSRSDKRPRP
EDFARPQRELSAGSTDQARGEGMAQRVAKQQKPGNKTGGRGRRRSVRTQTDSRRAPVQAS
HRAHAQEGGQSDKPDNASRTAVPRNENISGRKRNSAAQAGRRVKRRVVRTNPGDRDTSHN
AGALSATPVHGEKEAQNGAPAQAETKVVRRGKKRAVKKASTKAPGSSQANAKDVGRRRRV
ARRATS
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggcggcacagaactctcaaggaacaactgaaaacctacaggcagctgcggctttggcc
caacgcatagacctgagcgagctcaaggataaaactcgcgtgtatgccatggccaaaaag
ctcggcctatcatcacgtcggctggtggcgcagcttaaggagatgggcctgaacaagacc
gctcagagctctattactcgcgcggaagcaggtgacctcttcgccgctttggagcgccaa
gctggggctgcggaggcggtacagtctttagccgctgacgagaacccagcggaccagaag
cccgagagcaaggccaagaccaccaaacgccctcggcgcacccgcaaggccactaagaag
tccgcgcccgcggcaaagaaagaaccaacacagcctgatactgccgagacagataacgct
cccgctgaaaacaccgcagccgatgtggaagaggagaagagcctgcgctaccgcgtgcgc
aagaacgtggataatgaaatctcccagattgaagaaaaggtcgatgcctcgttggtaaaa
agcgcactgccggatgtcaagcaggcgctggaccatttaccggatcctgagccgacgaaa
gcgccggcgcgcgctgcagacaccgatgctgcggaggctggcaccgctactggcagtgcg
ggtgacctgacgggtaccgtgaatccagctaagcttcgcgaggtgctagctgaggcgggc
gaggacctcgacgatgattacttcgcaccgcgcatggtgccacaggcagagacggacgaa
gattctgccacgtatgactttgcgccgctgtttatgccaccggtgcagcaggcggccacc
gaactgcacgaggccacagacattgcggcgatcactgaaaccactgatgtgacggatcct
gccgaagacgccgagtctgacggtcccgaggcgagccatggggcatggcgcggggcttcc
gacaagcgccgtcgcggccgtcgcggtacctcccgcggccgcggtggctacgataacccc
ccaggaaaagcagcggataaggagctggagtttatcgatgagcccaaggccatccgcggc
tccacccgcattgaggcacagaagcgtcgccgcgaagaattgcgtgaaaagggccgcgag
cgccagcatattgtgtcccaggcggagtttttggcgcggcgtgaggccgtggaacggacc
atggtggtccgcgataagcagcgtgaagacggcgcgggcatcgtcacgcaggtgggtgtg
cttgaagatgacctcctggttgaacacttcgttaccaccgatgctcaagcctccctcatc
ggcaatatttacctaggccgcgtgcaaaacgttttgccttccatggaggcggcattcgta
gacatcggtcaaggccgcaatggtgtgctctatgccagcgagattgattggcgtaaaacc
aaattgcacgggcgttcccgcaaggtagaaaacactctgaaatccggcgaccaaattgtg
gtgcaggtggccaaggactcgattggccacaagggtgcgcgcctgaccacccggatttcc
ctggccggtcgctacctcgtctacgttccaggcgggcgtagcgccggaatttcgcgcaag
ctgccggcaccggagcgcaagcgcttaaaagaaatcttgaggcgtgtggtgcccggtgat
ggcggtaccatcatccgcacagctgctgaaaacgtgcccgaaaaggccattgctaccgat
gtgcagcgcttgcataaccggtgggaagatatttccgctcaggccgaaaaagaaaaatcc
tcgaagggtgctaagccggtaactctctatgaagagccgaatatgctcatcaaggttgtt
cgcgatcttttcaacgaagatttccaccgtctgatcgtggacgggaagcgatcctttaac
acggttaatgcctacgtggaatccatggccccggacctcgcggaccgggtggaacgttat
cagtcgaacgaacatggaggccaagacgcgtttgccgcctaccgcattgatgagcagctg
cataaggcgctttcccgcaaagtgtggctaccgtccggtggcaccttggtcattgaccgc
actgaggctatgaccgtcattgacgtcaacaccggcaagttcaccggttccggtggcaac
ctggaagagaccgtcacccgtaataatttggaggcggccgaagaaatcgtgcgccagatg
cgcctgcgcgatctgggcggcatgatcgtggtggactttattgacatggtgctaccggaa
aaccaggacttagttttgcggcgcctgaaggaagccttgggtcgcgatcgcacgcgccac
caggtatctgaggtcacctctttgggcttggtgcaaatgacgcgcaaacgtttgggcacc
gggctagtagagaccttttctaccgaatgtgagcactgccgtggccgcggaatcatcatt
cacgagtatcccgtcgacgaactagaagacagtcactccagccatcactcgcatggctcc
cctagggcgcacaagaagcctgccaatgatccccagcagcacccggctgccgttgcgatg
cacgagcacgaagatgcggacgagcacccggagaagaatgaccagaaagggcagaaaaac
cacacggtgcgaaggagcgcttcccagtcgcggaagtaccagaagaccaatggtcctctc
tacggcagtgatgataagcagtcaccgtccctagaggagctggtggccaatgtagtcgta
tacgaagagccagccgaatgtgagcaggaggcaccacagaaacggaccgaaaaccccagc
ggaaaccgggaccagcgtggccgcggtgaaggcaagcagaaaaagcgccgccgagtccag
aagaggtcggcggtcacggaaatcgaggccatcgcctatgctgcggcggaaaacgccgcc
gacagcgatgaggtacaggaatttaattcttatgtgcccgatggccaagaaaagttggcg
acggaggagaaacgtacccagcggggtaagaagcggcgccgggcgacgcggacctcgccc
gcgtcccgtcgcgcgcaggcgcagccgagtcacggccagtggggcgctgaggagaagcaa
gcagtggctccggatgcagcggagaagacctacgaggaggcagtagcggagtttgaggct
tcgccgcgccggaagcggcgcacgcgtggcaattcgcgttccgataagcgcccacgtcca
gaggattttgcccggccgcaacgagagttatccgcaggatccactgatcaggcacggggt
gagggcatggcacagcgggtagccaagcagcagaagcccggcaacaagacaggcgggcgt
ggtcggcgtcgcagcgtccgcactcagacggattctcgccgggctcctgtacaggcctcg
caccgggcgcatgcacaggagggtgggcagagcgataagcctgacaacgcctcgcggacg
gcggtgccgcgcaacgaaaatataagcggcaggaagagaaattccgcggcacaggcaggc
cgtcgcgtcaaacgccgcgtggtgcgcaccaaccccggggatagggacacctcgcataat
gcgggtgctctctcggcgacgcctgttcacggcgagaaagaagcccagaacggtgcgcct
gcgcaggccgaaacgaaagttgttcgccgcggaaagaagcgtgcggtgaaaaaggcgtct
actaaagcgccggggagctcgcaggctaatgccaaggatgtgggccggcggcggcgcgta
gcacgaagagctacttcctag
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