Corynebacterium macginleyi: GWO64_008010
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Entry
GWO64_008010 CDS
T08010
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cmf
Corynebacterium macginleyi
Pathway
cmf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GWO64_008010 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmf03400
]
GWO64_008010 (mfd)
Enzymes [BR:
cmf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GWO64_008010 (mfd)
DNA repair and recombination proteins [BR:
cmf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GWO64_008010 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
UB2H
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QRJ57219
LinkDB
All DBs
Position
complement(1633651..1637292)
Genome browser
AA seq
1213 aa
AA seq
DB search
MATPMLAGLLKVAATDPKLKGLVVNVGQNLHITGIDQARPWALGTLAHHAPVLAVTATSR
EAEDLTAELTAMMGDKVAMFPSWETLPHERLSPGVDIIGKRAQVLHNIDDLRIIVTAARG
LAQPILQEIEGRTPVHLEENHEYNFDEVVRSLEFRAYKHVDMVAKRGEFATRGGIIDVFP
TTMDYPVRVEFWGDEVTDIRQFSVADQRTISEIEVGRVDIFPARELPITDAVAQRAATLA
ATHTGNPALVELLTKVSEYIPAEGMEAVLPVLSDAPLITLSEFLPAATHVVMIAPEKIRR
RVEDLEKTDAEFLAAGWEAAAMGADGPLSTEGLDTKGSSYRSFESLEVSICEAGQPLWTF
SPPGMLAGPEEETLPLEFEPGPTPRGDVKEIDAMMAQLLAHTHAGGRAAFIAPAQGAIKR
MVERFAEQGIRTKVATPGWEPSAGEVTLYQALSHAGLVFPKVRKLKDVEALPLVVVTETD
LTGNRVGDIADAKRRPAKRRNKVDPLALKQGDFVVHETHGIGKFLKMAERTIQSGDETSR
REYIVLEYAPSKRGQPADQLWVPMDSLDLLSKYTGGESPHLSKMGGSDWKNTKKKARAAV
REIAGELVDLYAKRQAAPGHQFAPDNPWQAEMEDNFPFVETEDQMLAIDAVKEDMESSVP
MDRVVVGDVGYGKTEVAIRAAFKAVQDGTQVAVLVPTTLLAQQHYDTFSERMAGFPVKIA
VLSRFTSKKEASEIFKGLVDGSIDIVVGTHRLLQTGVHWKNLGLIVVDEEQRFGVEHKEH
IKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYEDKQVAAA
IRRELLRDGQTFFIHNKVSDIEKKARELRDLVPEARIVVAHGQMNEDVLEKTVQGFWDRE
YDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGAT
LTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGE
AVEAYKSLARGEVPAVTDEGPKEIRIDLPVDAHIPESYIDSERLRLEVYRKLAASQDNKD
LTAAREEMEDRFGPLSKEVERLLAVARLRHQARRAGVADITVQGTRVKFHPVELPDSKQV
RLKRLYPGSSFRAAAKAINVPFPKAGRNVTSPKLRDTELLQWAADFLSALFDVQPINVSG
EPTGAGSVISVGE
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccaatgttggcagggctgcttaaggtcgcggctacggaccccaagctcaag
gggcttgtggtcaacgtgggccaaaacctgcacattacgggtattgatcaggcgcgcccg
tgggctcttggcaccctggcccaccacgcacctgtgctggcggtaacggccactagccgc
gaggccgaggaccttaccgcggagctgaccgccatgatgggcgataaggtcgcgatgttt
ccctcctgggagacgctgccgcacgagcggctgagcccgggcgtggatatcatcggcaag
cgcgcgcaggtgctacacaacattgatgacctgcgcattattgttacggccgcgcgcggg
ctagcccaacccatcctgcaagaaattgaagggcgcaccccggtgcatctggaagaaaac
catgagtacaacttcgacgaagtggtgcgcagcctggaatttagggcatataaacacgtg
gatatggtagccaaacgcggtgagtttgctacccgcggtggcatcattgatgtctttccc
accaccatggattacccggtgcgcgtcgaattttggggcgatgaggtcaccgatattcgc
caattttctgttgctgaccagcgcacgatctcagaaattgaagtcggccgcgttgatatc
ttcccagcccgcgagctgccgattacggatgcggtggcgcagcgcgcggctacattggcg
gcgacgcataccggaaacccggcgttggtggagcttttgactaaggtgagcgaatatatt
ccggctgagggcatggaggcggttttgcccgtgctttccgatgccccactgatcaccctc
tccgaattcctccccgccgccacccacgtggtaatgatagcgccagaaaaaatcaggcgc
cgcgtcgaggatctggaaaaaaccgatgcggaattccttgctgctgggtgggaggccgcg
gcgatgggcgcagatggccccttgtccacggaagggctcgataccaaaggatcgagctac
cgctcctttgagtccttggaagtctctatttgcgaggccgggcagccgctgtggacattt
tctccacctggtatgttggctgggccggaggaagaaaccctgccgctcgagtttgagccg
gggcccaccccgcgcggagatgtcaaagaaatcgacgcgatgatggcccagctattggcg
catactcacgctggcgggcgtgcggcgtttatcgcgcctgcccagggcgccatcaaacgc
atggtggagcgctttgcagagcagggcattcggaccaaggtggccacccccggctgggaa
cccagtgcgggcgaggtcaccttgtatcaggcgctcagccacgccggtttggtctttccc
aaggtgcgcaagctaaaagacgtcgaggcgttgccgctcgtcgtggtcacggaaaccgat
ctgactggtaaccgcgtaggcgatattgcagacgccaagcggcgcccggccaaacgccgc
aataaggtggacccgctggcgctcaagcagggcgattttgtggtgcatgaaacgcacggc
atcggcaagtttttgaagatggccgagcgcactatccaatccggcgatgagaccagtcgg
cgcgaatacatcgtgctggaatatgcgccttccaagcgtgggcagccggcggaccagctg
tgggtgccgatggattcgctggatctgctcagcaaatacactggcggcgaatctccgcac
ctatccaagatgggtggctccgactggaagaacaccaagaagaaggcgcgcgctgctgtg
cgcgaaatcgccggcgaattggtggacctttatgccaagcgccaggccgcaccaggtcac
cagttcgcgcccgataatccctggcaggcggagatggaggataattttcccttcgtcgaa
accgaggaccagatgctggctatcgacgcggtgaaagaggatatggaatcctcagtgccg
atggaccgtgtagtcgtcggcgatgtgggatatggcaagaccgaggtcgctattcgcgcc
gccttcaaggcggtccaagatggcacccaggtcgccgtgcttgtgccgaccacgctgcta
gcgcagcagcactacgatacttttagcgagcgcatggccggtttccccgtaaagattgcg
gtgttgtctcggtttacctccaagaaggaagcctcggaaattttcaaggggctggtagat
ggctcgattgatatcgtcgtcggcacgcaccgcctgctgcaaaccggcgtgcactggaag
aacttgggcctcatcgtggttgatgaggagcagcgcttcggtgtggagcacaaggaacac
atcaaggcgttaaaagccagcgtggacgtgctcaccatgtccgcgacgccgattccgcgc
acgttggagatgtccatggcaggtattcgcgaaatgtcgaccattctcaccccaccggag
gaccgccacccggtgctgacctatgttggcgcctacgaggacaagcaagtcgcggccgcc
attcggcgcgagcttctgcgcgatggccagaccttcttcatccacaataaggtctccgat
attgaaaagaaggcgcgcgagctgcgcgacttggtgccggaagcgcgcatcgtcgtcgcc
catggccaaatgaacgaggatgtactggaaaagaccgtccagggattctgggaccgcgag
tatgacgttttggtctgtaccacgatcgtggaaacaggcctggatattgccaatgccaat
acgctcatcgtggaaaatgcgcaccacatgggtctgtcacagctgcaccagttgcgcggg
agggtgggccgctcccgcgagcgcgggtacgcctactttctgtaccccaagggagccaca
ctgactgagaactcttatgaccgcctggccaccatcgcgcagaacaatgatctcggtgcg
ggcatggccgtggccatgaaggacttggagatgcgcggtgctggcaacgtcctgggcgca
cagcaatccggccatatcgcaggcgtgggctttgacctctacgtgcgcttggtcggtgaa
gccgtggaggcctacaaatccttagcccgtggcgaggtacctgcggtaacggacgaaggc
ccgaaagaaatccgcatcgaccttcccgtggatgcgcacattcctgagtcctatatcgat
tccgagcgtctgcgacttgaggtttaccgcaagttggcggcctcgcaggacaataaggat
ctcacggcggcgcgggaggaaatggaagaccgcttcgggcccttgtccaaagaagtagag
cgcttgctcgccgtggcgcgcctgcgccatcaagctcggcgggccggggtggcagacatt
accgtgcagggtacccgggtgaaatttcacccggtcgaactgccggattccaagcaagtg
cgcctcaagcgcctctacccgggatcgagcttccgggcagcggccaaggccatcaacgtc
cccttccccaaagccgggcgcaatgtcacctcgcccaagttgcgcgatacagagctcctc
cagtgggccgcagactttttgagcgcgctttttgatgtccaacccatcaacgtctcgggt
gagccgaccggtgccggatcagtcatcagcgttggcgagtag
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