Clavibacter michiganensis subsp. insidiosus: VO01_02215
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Entry
VO01_02215 CDS
T03862
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cmh
Clavibacter michiganensis subsp. insidiosus
Pathway
cmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VO01_02215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmh03019
]
VO01_02215
03400 DNA repair and recombination proteins [BR:
cmh03400
]
VO01_02215
Enzymes [BR:
cmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VO01_02215
Messenger RNA biogenesis [BR:
cmh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VO01_02215
DNA repair and recombination proteins [BR:
cmh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VO01_02215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HTH_IclR
Pribosyltran
AAA_22
Dimerisation
Motif
Other DBs
NCBI-ProteinID:
AJW78095
UniProt:
A0A0D5CFM4
LinkDB
All DBs
Position
456814..458988
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AA seq
724 aa
AA seq
DB search
MPDTATPPSSAATSDLRSAAREHLSRLVGVAGADFHDGQFEAIEALVQDRSRALVVQRTG
WGKSAVYFVATLLLRQQGLGPTLLVSPLLALMRDQVAAARRAGVRAVAMNSSNAHEWDDL
LRALDADEVDLLLVSPERLNNPRFRDEQLPALRARLGLLVVDEAHCISDWGHDFRPDYRR
LRDLISSVDERVPVLATTATANSRVVADVEEQLSVGSAGAGVVETDRVPVVTIRGPLARR
SLRLGVLRLENSRDRLGWLLSHLDELPGSGIIYALTVSAAQDTARLLRDAGHAVKAYTGR
DDPADREQAEGELQRNEVKALVATSALGMGFDKPDLGFVVHLGAPSSPVSYYQQVGRAGR
GSADADVLLLPGREDPDIWQYFATASMPDEQQAAAVIQALGESDRPLSVPALESRVSLSR
SRLDLLLKVLGVDGAVRRDTSGWSATGVPWVYDRARYEQVAAARVREQQAMLDYETTLGC
RMEFLQRQLDDDTAAPCGRCDRCAGAWYPSSLDQQASATASQALDKVGLPIEPRLRWPTG
ASSVGVPLSGAIAAGEQVDEGRALARLTDLGWGGRLRAVFAAGAEDAPVDDALVAACVRV
LAEWGWPERPRAVVHVPSASRPQLVGSLAQRIAEVGRLPFLGSLDLVDPGAPGAARGNSV
YRLGRVHPRFQVPAHLADDLAADPRPVLLVDDLVDTRWTLTVAGRLLRKAGATRVLPFAL
AQQG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacaccgccacgccgccctcctccgccgcgacctccgacctccggtccgccgcc
cgcgagcacctctcgcggctcgtcggcgtcgcgggcgccgacttccacgacgggcagttc
gaggccatcgaggcgctcgtgcaggatcgctcgcgcgccctcgtcgtgcagcgcaccggg
tggggcaagtcggccgtctacttcgtcgccaccctgctcctccgccagcaggggctcggc
cccacgctcctcgtctcgccgctgctcgcgctcatgcgcgaccaggtggccgcggcccgt
cgcgcgggcgtgcgcgcggtcgccatgaactcgagcaacgcccacgagtgggacgacctg
ctgcgcgcgctcgacgcggacgaggtcgacctcctgctcgtgtcgcccgagcgcctcaac
aacccgcgcttccgcgacgagcagctgcccgcgctccgggcccggctcggcctcctcgtg
gtcgacgaggcgcactgcatctccgactggggccacgacttccggcccgactaccggcgc
ctgcgcgacctcatctcctccgtcgacgagcgcgtgcccgtgctcgccaccacggccacg
gccaactcgcgcgtggtcgccgacgtcgaggagcagctgagcgtcggatccgccggagcg
ggcgtcgtcgagaccgaccgcgtgcccgtggtcaccatccgcgggccactcgcccggcgc
tcgctccggctcggcgtgctgcgcctcgagaacagcagggatcggctcggctggctcctc
agccacctcgacgagctgcccggcagcggcatcatctacgccctcaccgtgtccgccgcg
caggacaccgcgcggctgctgcgcgacgcgggtcacgccgtgaaggcgtacacggggcgc
gacgacccggccgaccgcgagcaggccgagggcgagctgcagcgcaacgaggtcaaggcg
ctcgtcgccacgagcgcgctcggcatgggcttcgacaagcccgacctcggcttcgtggtg
cacctcggggcgccgtcctcgcccgtctcctactaccagcaggtggggcgcgcgggccgc
gggtccgccgacgccgacgtgctgctcctgcccggccgcgaggatccggacatctggcag
tacttcgccaccgcgtcgatgccggacgagcagcaggcggccgccgtcatccaagcgctc
ggcgagagcgaccggccgctgtccgtgccggcgctcgagtcgcgggtgtcgctctcgcgc
agccggctcgacctcctgctcaaggtgctcggcgtcgacggggccgtccgtcgggacacc
tcgggctggtcggccacgggcgtcccgtgggtctacgaccgcgctcggtacgagcaggtc
gccgcggcgcgcgtccgcgagcagcaggcgatgctcgactacgagaccacgctcggctgc
cgcatggagttcctccagcggcagctcgatgacgacaccgcggcgccctgcggccgctgc
gaccggtgcgcgggcgcgtggtacccgtcgtcgctggaccagcaggcgtcggccacggcg
tcgcaggcgctcgacaaggtcgggctccccatcgagccgcggctgcgctggcccacgggc
gcgtcgagcgtcggcgtgccgctcagcggagcgatcgccgcgggcgagcaggtcgacgag
ggccgcgccctcgcgcgcctcaccgacctcggctggggcgggcggctccgcgcggtcttc
gcggccggcgccgaggacgcgcccgtcgacgacgcgctcgtcgccgcctgcgtgcgggtg
ctcgccgagtggggctggccggagcgcccgcgcgccgtcgtgcacgtgccgtcggcgagc
cggccgcagctcgtcgggagcctcgcccagcgcatcgccgaggtcgggcggctgccgttc
ctcgggtcgctcgacctcgtggaccccggggcgcccggtgccgcgcgcggcaacagcgtc
taccggctggggcgcgtgcacccgcggttccaggtgcccgcgcacctcgcggacgacctc
gcggcggatccgcgtccggtgctcctcgtggacgacctggtcgacacccgctggaccctc
acggtcgccggccgcctgctgcggaaggccggcgccacgcgagtgctgcccttcgcgctc
gcgcagcaggggtag
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