Clavibacter michiganensis subsp. insidiosus: VO01_04695
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Entry
VO01_04695 CDS
T03862
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cmh
Clavibacter michiganensis subsp. insidiosus
Pathway
cmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VO01_04695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmh03021
]
VO01_04695
03019 Messenger RNA biogenesis [BR:
cmh03019
]
VO01_04695
Transcription machinery [BR:
cmh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
VO01_04695
Messenger RNA biogenesis [BR:
cmh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VO01_04695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
NACHT
SAP
CoV_NSP2_C
Motif
Other DBs
NCBI-ProteinID:
AJW78519
UniProt:
A0A0D5CGV3
LinkDB
All DBs
Position
968052..970520
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AA seq
822 aa
AA seq
DB search
MTDVDTRATTADLSALRVSQLQAIASELGIPGGSKLRKGELVTAISEIQAARGTTAPADE
TPPEAVVPAETGDATPAAEPAAVEEAPASEPVVADAAPIADAAPVADATPVEAPAAETPA
AEAPAEQPARSGRGSRRASTARIVPERIAETVEAPASEPAGTGLEARIAEATGGRAQEPR
TEAPRTEAPARSGRGSRRATSSGVVDPAAEAPRQAAQHVNSGQTADQLVPADAQADAAAP
AVDAPTEEQAPAQRSGRGRRRGGRDAQDGADRGAAQDAPAQDTADEAPAANEQADRQRDD
RDADDQGGRRDDQGREGREGGRNRSRNRRNRDRGRDQDDQQQGGRDQAPREQAPREPDAD
DEAQEEARTGRQRQNGRGQGDRTQDVRADQARADLGRDDDRGGRSRYRDRKRGRGQGGDD
FEPEVTEDDVLLPVAGILDVLDNYAFVRTSGYLPGTNDVYVSLGQVKKHSLRKGDAIVGA
IRQPRENDSQSRQKYNAIVKIDSVNGLPPEEAANRVEFGKLTPLYPQDRLSLETEPAKLT
TRIIDLVSPIGKGQRGLIVSPPKAGKTLVLQAIANAIATNNPEVHLMVVLVDERPEEVTD
MQRTVKGEVIASTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAA
PASGRILSGGVDSSALYPPKRFFGAARNIEHGGSLTILATALVETGSKMDEVIFEEFKGT
GNMELRLSRALADKRIFPAVDVNASGTRREEMLMGADEVKVTWKLRRALAGLEQQQALEI
VLSRLKETTSNVEFLMKVQASMPNTGNGVSHQSHGHGAHEKG
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtcgacacccgcgccaccaccgcggacctgagcgcgctccgcgtctcccag
ctccaggccatcgcctccgagctcgggatcccgggcggctccaagctccggaagggcgag
ctcgtgaccgcgatctccgagatccaggcagcccggggcaccaccgcccccgccgacgag
acgccccccgaggccgtcgtacccgccgagaccggcgacgcgacccccgccgccgagccc
gccgccgtcgaggaggcccccgcctcggagcccgtcgtcgccgacgccgccccgatcgcc
gacgccgccccggttgcggacgcgacccccgtcgaggcgcccgccgccgagacccccgcc
gccgaggccccggccgagcagcccgcgcgctccggtcgcggatcccgccgtgccagcacc
gcccgcatcgtgcccgagcgcatcgccgagaccgtcgaggcgcccgcgtccgagcccgcc
ggcaccggcctcgaggcccgcatcgccgaggccacgggcggccgcgcgcaggagccccgc
accgaggcgccccgcaccgaggcgcccgcgcgctccggccgcggatcccgccgcgccacg
agctccggcgtcgtggaccccgccgccgaggccccgcgccaggccgcgcagcatgtgaac
agcggccagaccgccgaccagctcgtccccgccgacgcgcaggccgacgcggccgcgccc
gccgtcgacgcgccgaccgaggagcaggccccggcccagcgctccggccgcggccgtcgc
cgcggcggacgcgacgcccaggacggcgccgaccgcggcgccgcgcaggacgcgcccgcc
caggacaccgccgacgaggcgcccgccgcgaacgagcaggccgaccgccagcgcgacgac
cgcgacgccgacgaccagggcggacgccgcgacgaccagggccgcgagggtcgcgagggc
ggacgcaaccgcagccgcaaccgccgcaaccgcgaccgcggccgcgaccaggacgaccag
cagcagggcggccgcgaccaggcaccccgcgagcaggccccccgcgagcccgacgccgac
gacgaggcgcaggaggaggcccgcaccggccgccagcgccagaacggccgcggccagggc
gaccgcacgcaggacgtgcgcgccgaccaggcccgcgccgacctcggccgcgacgacgac
cgcggcggccgcagccggtaccgcgaccgcaagcgcggccgcggccagggcggcgacgac
ttcgagcccgaggtcaccgaggacgacgtcctcctgcccgtcgcgggcatcctcgacgtg
ctcgacaactacgcgttcgtccgcacgagcggctacctgcccggcacgaacgacgtgtac
gtctcgctcggccaggtcaagaagcactcgctgcgcaagggcgacgcgatcgtcggcgcc
atccgccagccgcgggagaacgacagccagagccgccagaagtacaacgcgatcgtgaag
atcgactcggtcaacggcctgccgcccgaggaggccgcgaaccgcgtcgagttcggcaaa
ctcacgccgctctacccgcaggaccgcctcagcctcgagaccgagccggccaagctgacc
acgcggatcatcgacctcgtgtcgccgatcggcaagggccagcgcggcctcatcgtctcg
ccgcccaaggccggcaagacgctcgtgctccaggccatcgcgaacgccatcgccaccaac
aaccccgaggtccacctcatggtcgtgctggtcgacgagcgtcccgaggaggtcaccgac
atgcagcgcacggtgaagggcgaggtcatcgcctccaccttcgaccgtcccgccgaggac
cacaccacggtcgccgagctcgccatcgagcgcgccaagcgcctcgtggagctcggccac
gacgtggtcgtgctgctcgactccatcacccgcctcggccgcgcgtacaacctcgcggcg
cccgcgtcgggccggatcctctcgggcggcgtcgactcgtcggcgctctacccgccgaag
cgcttcttcggcgcggcgcgcaacatcgagcacggcggatcgctcacgatcctcgccacg
gcgctcgtggagaccggatccaagatggacgaggtcatcttcgaggagttcaagggcacc
ggcaacatggagctgcgcctctcgcgcgccctcgccgacaagcggatcttccccgcggtc
gacgtcaacgcctccggcacgcgccgcgaggagatgctcatgggcgccgacgaggtcaag
gtcacctggaagctgcgccgcgccctcgccgggctcgagcagcagcaggccctcgagatc
gtcctcagccgcctcaaggagacgacgtcgaacgtcgagttcctcatgaaggtccaggcc
tccatgcccaacaccggcaacggcgtgtcccaccagagccacgggcacggcgcgcacgag
aagggctga
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