Clavibacter michiganensis subsp. insidiosus: VO01_04905
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Entry
VO01_04905 CDS
T03862
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cmh
Clavibacter michiganensis subsp. insidiosus
Pathway
cmh03420
Nucleotide excision repair
cmh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VO01_04905
03430 Mismatch repair
VO01_04905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmh03400
]
VO01_04905
Enzymes [BR:
cmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VO01_04905
DNA repair and recombination proteins [BR:
cmh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VO01_04905
MMR (mismatch excision repair)
Other MMR factors
VO01_04905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Viral_helicase1
Card1_endonuc
Motif
Other DBs
NCBI-ProteinID:
AJW80417
UniProt:
A0A0D5CM84
LinkDB
All DBs
Position
1009351..1012572
Genome browser
AA seq
1073 aa
AA seq
DB search
MISAQRIAETLGLPSPTEQQRRVIESPLEPGLVVAGAGSGKTETMASRVVWLLANGLVGI
EEILGLTFTRKAAGELGVRIRARIEQLQQAELAAVPADAFATPTVQTYNAFANGIFRDSA
TLIGPEAESVVLTEASAWQLARRLVVESTDPRLLELGRGVDPITQAVISLSRAMSENVAD
PAEVVRLAGSFTGLAELPFGSARIRKAPAADAVAAVGALPPLVDLAVRFQEEKTRLGLVE
YSDQVAFALAICERVPQVVAEHRKRFRVVLLDEYQDTSVVQTRLLATLFGGTPVMAVGDP
HQSIYGWRGASAANLARFGADFAPAGASAADVPVYALSTSWRNPGAVLGAANRIVEPLTA
ASRIPVARLEPRPDAGDGRLDVAYEETIADEAASVAAWFADRLRQTGSDGRPRSAAMLCR
SLKTIEPFTTALADRGVPFRVLGLGRLLDQPAVVDLVCVLRVLHDPTAGSELVRLLTGAH
WRIGTKDVHALSRVASWLMSRDHAQKPLADEVRDGLRASVVPDEVGSVVDALDFVVGARD
GHTALAGFSEEGLARLRTAGRQLQVLRSRVGLDLVDLVTVVQQELLLDIEVAANETDPLG
RASLEAFTEQVAGYLQGDSAGTLGPFLAWLAEAERRDNLAPRTEEPEPGTVQILTIHGSK
GLEWDVVAVPRMVEGELPGTLREKRGWVAFGALPFEFRGDSAELPSLAWRGVETQKEFAE
AMEAFGEELEERNAAEQRRLAYVAITRTRSDLLLTGSFWSTQQKPRGPGAFLREIQQVGL
IAPDALPEAPELEENPLEPGSARVAWPLPPLGPREARVRAAAEAVAVAAPDAETVWTRDI
DLLLAERDARARDAELVDLPTRIPASRFKDFVSDPAGVAARLRRPMPERPYRQTRLGTLF
HGWVEARYGPAGTADVIDASGVELDADPTEPPVETEDLDRLRATFEASEWAARKPEEVEV
EIHMELAGQVVICKIDAVFLIDGRYRVVDWKTGRTPKDAADLELKQLQLALYRLAFAKWR
GIDPDLIDAEFYFVAEDRSLKPERLYSEEDLVALWSGARTPDASRAPSGETVG
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgatcagcgcccagcgcatcgcggagacgctcggcctgccgagccccaccgagcagcag
cggcgcgtgatcgagtcgccgctcgagcccggcctcgtcgtcgcgggcgccggcagcggc
aagaccgagaccatggcgagccgcgtcgtgtggctgctggccaacgggctcgtggggatc
gaggagatcctcggcctcacgttcacgcgcaaggcggcgggcgagctcggggtgcggatc
cgcgcgcgcatcgagcagctgcagcaggccgagctcgcggccgtgcccgcggacgcgttc
gcgacgcccaccgtgcagacctacaacgcgttcgcgaacggcatcttccgcgacagcgcc
accctcatcggccccgaggcggagtcggtcgtgctcacggaggcgtccgcgtggcagctg
gcgcgccgactcgtcgtcgagagcaccgacccgcggctgctcgagctcgggcgcggggtg
gatcccatcacccaggccgtcatctccctcagccgcgcgatgagcgagaacgtcgccgac
ccggccgaggtcgtgcggctcgccgggtcgttcacgggcctcgcggagctgccgttcgga
tccgcccgcatcaggaaggcccccgcggccgacgcggtcgccgccgtcggcgcgctgccg
ccgctcgtcgacctcgccgtgcgcttccaggaggagaagacccggctcgggctcgtggag
tacagcgaccaggtcgccttcgcgctcgccatctgcgagcgggtgccgcaggtcgtcgcc
gagcaccggaagcgcttccgcgtggtgctgctcgacgagtaccaggacacctcggtcgtg
cagacccggctcctcgccaccctcttcggcggcacgcccgtcatggcggtgggggacccg
caccagtcgatctacggctggcgcggcgcgagcgcggcgaacctcgcgcgcttcggcgcc
gacttcgcgccggccggcgcctccgccgccgacgtgcccgtctacgcgctctccaccagc
tggcggaacccgggcgcggtgctcggcgccgcgaaccgcatcgtcgagccgctcaccgcc
gcctcgcggatccccgtcgcgcgcctcgagccccgtcccgacgcgggcgacggccgcctc
gacgtcgcctacgaggagaccatcgcggacgaggccgcgagcgtcgccgcgtggttcgcc
gaccggctgcggcagaccggatccgacggccgtccccgctcggccgccatgctctgccgc
tcgctcaagaccatcgagccgttcaccacggcgctcgccgaccggggcgtgccgttccgc
gtgctcggtctcgggcgcctcctcgaccagcccgccgtggtggacctcgtgtgcgtcctc
cgcgtgctgcacgaccccaccgcgggcagcgagctcgtgcgcctcctcacgggcgcgcac
tggcgcatcggcacgaaggacgtgcacgcgctgtcccgcgtcgcctcctggctgatgtcc
cgcgaccacgcgcagaagccgctcgccgacgaggtccgcgacggcctccgcgcctccgtg
gtgcccgacgaggtcgggtccgtcgtcgacgcgctcgacttcgtggtcggcgcccgcgac
ggccacaccgcgctcgcgggcttcagcgaggagggcctcgcgcgcctccggaccgccggt
cgccagctgcaggtgctgcggtcgcgcgtcggtctcgacctggtggacctcgtcacggtc
gtccagcaggagctgctgctggacatcgaggtcgccgccaacgagacggatccgctcggc
cgcgcgagcctcgaggccttcaccgagcaggtggccggctacctccagggcgactccgcg
ggcacgctcggcccgttcctcgcctggctcgccgaggccgagcggcgcgacaacctggcg
ccgcgcaccgaggagccggagcccggcaccgtgcagatcctcacgatccacggctcgaag
ggcctcgagtgggacgtcgtcgccgtgccgcgcatggtcgagggcgagctgcccggcacg
ctccgggagaagcgcggctgggtcgcgttcggcgccctgccgttcgagttccgcggcgac
tccgccgagctgccgtcgctcgcgtggcgcggcgtggagacgcagaaggagttcgccgag
gccatggaggcgttcggcgaggagctcgaggagcgcaacgccgccgagcagcggcgcctc
gcgtacgtggccatcacgcgcacgcggtccgacctgctgctcaccgggtcgttctggtcg
acgcagcagaagccgcggggaccgggcgcgttcctccgcgagatccagcaggtgggcctc
atcgcgcccgacgccctgcccgaggcgcccgagctcgaggagaacccgctcgagccggga
tccgcgcgcgtcgcctggccgctgccgccgctcggcccgcgcgaggcccgcgtgcgcgcg
gccgccgaggccgtcgccgtcgccgccccggacgcggagaccgtgtggacccgtgacatc
gacctgctcctcgccgagcgcgacgcccgcgcccgcgacgccgagctcgtcgacctgccc
acgcgcatccccgcgtcgcgcttcaaggacttcgtgagcgaccccgcgggcgtcgccgcg
cgcctgcgccgcccgatgcccgagcgcccctaccggcagacgcggctcggcacgctgttc
cacggctgggtcgaggcgcggtacgggccggcgggcacggccgacgtcatcgacgcgtcc
ggcgtggagctcgatgcggatccgaccgagccgcccgtggagacggaggacctcgaccgg
ctgcgcgcgaccttcgaggcgagcgagtgggcggccaggaagccggaggaggtcgaggtc
gagatccacatggagctcgccggccaggtcgtcatctgcaagatcgacgcggtgttcctc
atcgacggccgctaccgcgtcgtcgactggaagaccggccgcaccccgaaggacgcggcc
gacctcgagctcaagcagctccagctcgcgctctaccgcctcgcgttcgcgaagtggcgg
ggcatcgaccccgacctcatcgacgccgagttctacttcgtcgcggaggaccggtcgctg
aagcccgagcggctctactccgaggaggacctcgtggcgctctggtcgggcgcgcgcacg
ccggacgcgtcgcgcgcgccgtcgggggagacggtgggctga
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