Clavibacter michiganensis subsp. insidiosus: VO01_06560
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Entry
VO01_06560 CDS
T03862
Name
(GenBank) ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cmh
Clavibacter michiganensis subsp. insidiosus
Pathway
cmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VO01_06560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmh03019
]
VO01_06560
03009 Ribosome biogenesis [BR:
cmh03009
]
VO01_06560
Enzymes [BR:
cmh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
VO01_06560
Messenger RNA biogenesis [BR:
cmh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VO01_06560
Ribosome biogenesis [BR:
cmh03009
]
Prokaryotic type
rRNA processing factors
VO01_06560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
AJW78838
UniProt:
A0A0D5CGQ2
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All DBs
Position
1367018..1370044
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AA seq
1008 aa
AA seq
DB search
MVERDENTGRRRPSLFERLTGRRAETTAATGTGGTPALSASATPEASGSPAASEAKGHTL
NENDDTRSTPDETEAPVVRRSRRASPPASAPAVAQPDDASVDASASASAPAASEEAAAEQ
PAARAPRKRAPRKAAVPAEQEAPAAEQSAAETTDDEPAAAEPVGAPAAEAPAAPTRTVRS
LSVVFQAPDIAPLPPRRERDDRRDDRRDDRRDDSRDEDDDLDRDERPSRSSRRGRGQDRG
QDRSTGRDGRGRDTRDDDHDDEDDSPSVRRRARRRSGEEGRDGDDAPGTVVKVRTPREPE
LITEPQRIKGSTRLEAKKQRRRDGRDAGRRRPVLTESEYLARRESVDRSMIVRSRDGKIQ
IGVLEDQVLVEHYVARADEASLIGNVYLGRVQNVLPSMEAAFIDIGRGRNAVLYSGEVDW
EAANADKGPGNHARRIEVALKPGDRVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPNGS
MNGISRKLPDTERARLKKTLKEVLPENVGVIVRTAAEGATEEQLKLDVERLTSQWAEISR
QVEKAQAPALLHSEPDLLLKIIRDVFNEDFRELVIDGGDAQEIIEGYLRGVAPDLIDRVQ
TYSGEKDSFDHHRVSEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGNLE
ETVTKNNLEAAEEIVRQMRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLSRDRTKHQV
AEVTSLGLVQMTRKKLGLGLLESFSENCETCAGRGIIIHHDPLMAHKQTPQEPVQGQGRR
RGGKGQQDQGTGNGGNGSNGGGGANGGAQAQPPRTPAASTHSITDDARSALAKIATSTIQ
TVNDAIGRVEDVVRTPDESTDAATPVESAPVEEQPRGDRPRRSRGGRGRASSATAEASDR
QEAQAPAAEAPSAPAEDPTPADAAVEEPALSTLEPREAIRLEPVQILDIPVASTRTAPRR
VSSADAEQLLGSVLDALPQPKEPGQGRSRSRRVSTQTLTTPAPVDDAS
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggtggagagagacgagaacaccggcaggaggcgacccagcctcttcgagcggctcacg
ggccgccgcgccgagacgaccgcggcgacggggaccggcggcacgcccgccctctccgcg
tccgcgacccccgaggcgagcggcagtcccgccgcctccgaagcgaagggccacaccctg
aacgagaacgacgacacccggtccacgcccgacgagacggaggcgccggtcgtccgacgc
tcccgccgcgcgagcccccccgcatccgcgcccgcggtcgcccagccggacgacgccagc
gtcgacgcgtccgcctcggcctccgcacccgcggcctccgaggaggctgccgccgagcag
cccgccgcccgggcgccccggaagcgcgccccgcgcaaggccgccgtcccggccgagcag
gaggcgcccgccgccgagcagtccgccgccgagacgacggacgacgagcccgcggcggcc
gagccggtcggcgcgcccgccgccgaggcgcccgccgcgccgacgcgcaccgtccgctcc
ctctccgtcgtcttccaggccccggacatcgcgccactgcctccccgccgcgagcgggac
gaccgccgggacgaccgccgggacgaccgccgggacgactcgcgtgacgaggacgacgac
ctcgaccgcgacgagcgtccctcgcgctcgtcgcgccgcggccgtggacaggaccgcggc
caggaccgcagcaccggacgcgacggtcggggccgcgacacccgcgacgacgaccacgac
gacgaggacgactcgccgtcggtccgccgccgcgcgcgccgccgctccggcgaggagggc
cgcgacggcgacgacgcgcccggcacggtcgtcaaggtccgcacgccgcgcgagcccgag
ctcatcaccgagccgcagcggatcaagggatccacgcgcctcgaggccaagaagcagcgc
cgccgcgacggccgcgacgccggacgccgccgtccggtcctcaccgagtccgagtacctg
gcacgccgcgagtccgtcgaccgcagcatgatcgtccgctcgcgcgacggcaagatccag
atcggcgtgctggaggaccaggtgctcgtcgagcactacgtcgcccgcgccgacgaggcg
tcgctcatcggcaacgtctacctcggccgcgtccagaacgtgctgcccagcatggaggcc
gccttcatcgacatcggccgcggccgcaacgccgtgctgtactccggcgaggtcgactgg
gaggccgccaacgccgacaaggggccgggcaaccacgcccgccgcatcgaggtcgcgctg
aagcccggcgaccgggtgctcgtccaggtcaccaaggacccggtcggccacaagggcgcg
cgcctcacgagccaggtgagcctccccggccgctacctcgtgtacgtgcccaacgggtcc
atgaacggcatcagccgcaagctccccgacaccgagcgcgcgcgcctcaagaagacgctc
aaggaggtgctgcccgagaacgtgggcgtcatcgtccgcaccgccgccgagggcgcgacc
gaggagcagctgaagctcgacgtcgagcgcctcacgtcgcagtgggccgagatcagccgc
caggtcgagaaggcgcaggcgcccgcgctcctgcactcggagcccgacctgctgctgaag
atcatccgcgacgtcttcaacgaggacttccgcgagctcgtgatcgacggcggcgacgcc
caggagatcatcgagggctacctccgcggcgtggcgcccgacctcatcgaccgggtgcag
acgtactcgggcgagaaggactcgttcgaccaccaccgcgtgagcgagcagatcgagaag
gcgctcgaccgcaaggtctggctgccctccggcggctcgctcgtcatcgaccgcaccgag
gccatgaccgtggtcgacgtcaacacggggaagttcgtcggatccggcggcaacctcgag
gagaccgtcaccaagaacaacctcgaggccgcggaggagatcgtccgccagatgcgcctg
cgcgacatcggcggcatcatcgtcgtcgacttcatcgacatggtgctcgagtcgaaccgc
gacctcgtgctccgccgcctggtggagtgcctcagccgcgaccgcaccaagcaccaggtc
gccgaggtcacctcgctcggcctcgtgcagatgacccgcaagaagctcggcctcgggctg
ctcgagtcgttctccgagaactgcgagacgtgcgccgggcgggggatcatcatccaccac
gacccgctcatggcccacaagcagacgccgcaggagcccgtgcagggccagggtcgccgt
cgtggcggcaagggccagcaggaccagggcaccggcaacgggggcaacgggagcaacggc
ggcggtggcgcgaacggcggcgcccaggcgcagccgccgcgcacgcccgcggccagcacg
cacagcatcaccgacgacgcgcgctccgccctcgcgaagatcgccacgagcaccatccag
acggtcaacgacgcgatcggccgggtcgaggacgtcgtgcgcacgccggacgagagcacc
gacgcggcgacgccggtcgagtccgctcccgtcgaggagcagcctcgcggcgaccgcccg
cgtcggagccgcgggggtcggggacgcgcgtcgtccgcgaccgccgaggcgtcggaccgc
caggaggcccaggcgcccgccgccgaggcgccgtccgctcccgccgaggacccgacgccg
gccgacgcggccgtggaggagcccgcactgtcgacgctcgagccgcgcgaggccatccgc
ctcgagccggtgcagatcctcgacatccccgtcgcgagcacccgcacggccccgcgccgc
gtgagctcggccgacgcggagcagctcctcggctccgtgctcgacgcgttgccgcagccc
aaggagcccggacaggggcggtcgcgcagccgtcgggtctcgacgcagacgctgacgacg
ccggccccggtcgacgacgcgagctga
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