Clavibacter michiganensis subsp. insidiosus: VO01_08530
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Entry
VO01_08530 CDS
T03862
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cmh
Clavibacter michiganensis subsp. insidiosus
Pathway
cmh03030
DNA replication
cmh03430
Mismatch repair
cmh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VO01_08530
03430 Mismatch repair
VO01_08530
03440 Homologous recombination
VO01_08530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmh03032
]
VO01_08530
03400 DNA repair and recombination proteins [BR:
cmh03400
]
VO01_08530
Enzymes [BR:
cmh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VO01_08530
DNA replication proteins [BR:
cmh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VO01_08530
DNA repair and recombination proteins [BR:
cmh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VO01_08530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
HROB
Motif
Other DBs
NCBI-ProteinID:
AJW80487
UniProt:
A0A0D5CMF5
LinkDB
All DBs
Position
complement(1782638..1786099)
Genome browser
AA seq
1153 aa
AA seq
DB search
MLDGAARVGPLVQAAAEQKMPAVAITDHGNVFGAFDFWKQAKAAGVKPIIGTEAYITPGT
HRGDRTRIRWGNGGQDDVSGSGAYTHLTMLAETTEGMHNLFRLSSRASLEGYYFKPRMDR
ELLSTYAKGLIATTGCPSGEVQTRLRLGQYDEAVKAAADFRDIFGAENYFCEVMDHGLGI
ERRIMTDLHRLAKDLGLPLVATNDLHYTHEHDATSHAALLCVQSGTTLDDPNRFKFDADE
FYLKTAQQMRHLFRDHEDACDNTLLIAERCDVQFNESANYMPRYPVPEGESEQTWFVKEV
ERGLVRRYPRGFSDDVRKRADYEVGVIAQMGFPGYFLVVADFINWSKENGIRVGPGRGSG
AGSMVAYAMGITDLDPLEHGLLFERFLNPDRVSMPDFDVDFDDRRRGEVIRYVTDKYGDE
RVAQIVTYGTIKAKQALKDSSRVLGYPFSMGDKLTKAMPPAIMGKDIPLSGILDTDHPRY
REAGDFREVLAMDPEAQKVFETAQGIENLKRQWGVHAAGVIMSSEPLIDIIPIMKREQDG
QIVTQFDYPACESLGLIKMDFLGLRNLTIIDDALNNIEANRGEKLVLEDLGLDDQGAYDL
LARGDTLGVFQLDGGPMRSLLRMMKPDNFEDISAVIALYRPGPMGANSHTNYALRKNGLQ
EITPIHPELEEPLREVLGTTHGLIVYQEQVMSVAQKLAGFTLAQADLLRRAMGKKKKSEL
DKQFEGFSQGMKDNGYSMAAVKALWDILLPFSDYAFNKAHSAAYGVVSYWTAYLKAHYPA
EYMAALLTSVGDSKDKMALYLNECRRMGIKVLPPDVNESIGFFAAAGADIRFGLGAVRNV
GANVVEALRGARTEQGAFESFDDFLKKVPLPVANKRTVESLIKAGAFDSLGDTRRALLEV
HEGMIDASVSDKRAAMNGQVGFDFDSLWDEPQHARKVPERPEWAKRDKLAFEREMLGLYV
SDHPLAGLEIPLAKLASTGIAELLATDASMDGETVTLAGLLTSVQHRTARNSGNQYGMVQ
LEDFGGEITCMFMGKAYQEFAPALQGDTVVVIRGRVSTRDDGMNIHAFSMFQPDLGQSLG
SGPLLISLAENRATTETVMGLNDVLIRHSGDTEVRLQLVKGETGRVFEIPFPVTVSADLY
GELKSLLGPNCLG
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacggggcggcccgcgtcggcccgctcgtgcaggccgcggccgagcagaagatg
ccggccgtcgccatcaccgaccacggcaacgtgttcggtgcgttcgacttctggaagcag
gcgaaggccgcgggcgtgaagcccatcatcggcaccgaggcgtacatcacgccgggcacg
caccgcggcgaccgcacccgcatccggtggggaaacggcggccaggacgacgtctccgga
tccggcgcctacacgcacctcacgatgctcgccgagacgacggagggcatgcacaacctg
ttccggctctcgtcccgcgcctcgctcgagggctactacttcaagccccgcatggaccgc
gagctgctcagcacctacgcgaagggcctcatcgccaccaccggctgcccgtccggcgag
gtgcagacgcggctccgcctcggccagtacgacgaggccgtgaaggccgcggccgacttc
cgcgacatcttcggggccgagaactacttctgcgaggtcatggaccacggtctcggcatc
gagcgccgcatcatgaccgacctccaccgcctcgccaaggacctcggcctcccgctcgtc
gcgaccaacgacctgcactacacgcacgagcacgacgcgaccagccacgcggcgctcctg
tgcgtccagtccggcaccacgctcgacgaccccaaccgcttcaagttcgacgccgacgag
ttctacctcaagaccgcgcagcagatgcgccacctcttccgcgaccacgaggatgcgtgc
gacaacacgctcctcatcgccgagcggtgcgacgtgcagttcaacgagtccgcgaactac
atgccgcgctacccggtgcccgagggcgagagcgagcagacctggttcgtcaaggaggtc
gagcgcggcctcgtgcgccgctacccgcgcggcttctccgacgacgtgcgcaagcgcgcc
gactacgaggtcggggtcatcgcgcagatgggcttcccgggctacttcctcgtcgtcgcg
gacttcatcaactggtcgaaggagaacgggatccgcgtgggccccggtcgcggatcgggc
gccggctcgatggtcgcgtacgccatgggcatcaccgacctcgacccgctggagcacggc
ctcctcttcgagcggttcctcaaccccgaccgcgtctccatgcccgacttcgacgtcgac
ttcgacgaccgtcgccgcggcgaggtcatccgctacgtgaccgacaagtacggcgacgag
cgcgtggcgcagatcgtcacgtacggcaccatcaaggccaagcaggcgctcaaggactcg
agccgcgtgctcggctacccgttctccatgggcgacaagctcaccaaggccatgccgccc
gcgatcatgggcaaggacatcccgctgtccggcatcctcgacaccgaccacccgcgctac
cgcgaggccggcgacttccgcgaggtgctcgcgatggaccccgaggcgcagaaggtcttc
gagaccgcgcagggcatcgagaacctcaagcgccagtggggcgtgcacgcggccggcgtc
atcatgtcgagcgagccgctcatcgacatcatcccgatcatgaagcgggagcaggacggc
cagatcgtcacgcagttcgactaccccgcgtgcgagtcgctcggcctcatcaagatggac
ttcctggggctgcgcaacctcacgatcatcgacgacgcgctcaacaacatcgaggccaac
cgcggcgagaagctggtgctcgaggacctgggcctcgacgaccagggcgcctacgacctg
ctcgcccgcggcgacaccctcggcgtgttccagctcgacggcgggcccatgcgatcgctg
ctgcgcatgatgaagcccgacaacttcgaggacatctcggccgtcatcgcgctctaccga
cccggccccatgggcgccaactcgcacacgaactacgcgctgcggaagaacgggctgcag
gagatcaccccgatccacccggagctcgaggagccgctgcgcgaggtgctcggcaccacg
cacggcctcatcgtctaccaggagcaggtgatgtcggtcgcgcagaagctcgcgggcttc
acgctcgcgcaggccgacctgctccgacgggccatgggcaagaagaagaagtcggagctg
gacaagcagttcgagggcttctcgcagggcatgaaggacaacggctactcgatggccgcg
gtgaaggcgctctgggacatcctgctgccgttctccgactacgcgttcaacaaggcgcac
tccgcggcgtacggcgtcgtctcctactggacggcgtacctcaaggcgcactacccggcc
gagtacatggccgcgctcctcacgagcgtcggcgactccaaggacaagatggcgctctac
ctcaacgagtgccgccgcatgggcatcaaggtgctcccgccggacgtcaacgagtccatc
ggcttcttcgcggcggccggcgccgacatccgcttcgggctcggcgccgtacgcaacgtc
ggcgcgaacgtggtcgaggcgctgcgcggcgcgcgcaccgagcagggcgcgttcgagtcg
ttcgacgacttcctgaagaaggtcccgctgccggtcgcgaacaagcgcaccgtggagtcg
ctcatcaaggccggcgcctttgactcgctgggcgacacccggcgggcgctcctcgaggtg
cacgagggcatgatcgacgcctccgtcagcgacaagcgcgcggccatgaacggccaggtc
ggcttcgacttcgacagcctgtgggacgagccgcagcacgcgcgcaaggtccccgagcgg
ccggagtgggcgaagcgcgacaagctcgccttcgagcgcgagatgctcggcctctacgtc
tccgaccacccgctggccgggctcgagatcccgctcgcgaagctcgcctcgacgggcatc
gccgagctgctggcgacggacgcgtcaatggacggcgagaccgtgacgctcgcggggctc
ctcacgagcgtgcagcaccgcacggcgcggaactccggcaaccagtacggcatggtgcag
ctcgaggacttcggcggcgagatcacctgcatgttcatgggcaaggcgtaccaggagttc
gcgccggccctgcagggcgacaccgtcgtggtgatccgcggccgcgtgtccacgcgcgac
gacggcatgaacatccacgcgttctcgatgttccagcccgacctcgggcagagcctcggc
tccgggccgctgctcatcagcctcgcggagaaccgcgcgacgacggagaccgtcatgggc
ctcaacgacgtgctcatccgccactcgggcgacaccgaggtgcggctgcagctcgtgaag
ggcgagacggggcgcgtgttcgagatcccgttcccggtcacggtgagcgcggacctctac
ggcgagctgaagtcgctgctcgggccgaactgcctgggctga
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