Clavibacter michiganensis subsp. insidiosus: VO01_09475
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Entry
VO01_09475 CDS
T03862
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cmh
Clavibacter michiganensis subsp. insidiosus
Pathway
cmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VO01_09475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmh03019
]
VO01_09475
03016 Transfer RNA biogenesis [BR:
cmh03016
]
VO01_09475
Enzymes [BR:
cmh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VO01_09475
Messenger RNA biogenesis [BR:
cmh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VO01_09475
Transfer RNA biogenesis [BR:
cmh03016
]
Prokaryotic type
tRNA degradation factors
VO01_09475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_KhpA-B
KH_PNO1_2nd
KH_NusA_1st
KH_2
Motif
Other DBs
NCBI-ProteinID:
AJW79323
UniProt:
A0A0D5CI51
LinkDB
All DBs
Position
complement(1993004..1995277)
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AA seq
757 aa
AA seq
DB search
MEGPEIKFAEAVLDNGKYGTRTVRFEAGRLAQQAQGAVAAYLDEDTMLLSATSVGKHPKD
NFDFFPLTIDVEERSYAAGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFITGLRNEVQ
VVITVLSIAPDEFYDSLAINAASASSMLSGIPFSGPIAGVRLALIGDQWVVFPKHSQLKE
AVFDITVAGRVVTDAQGNEDVAIMMVEAEATEGAWDLIQGGATKPDEAIVAQGLEAAKPF
IQQLVAAQASLAQQAAKPTVDYPVFLPYAQETYDAVSALALDELGTVYQIADKIERQDAD
DALKTRTKEAVAVKVEAGELPQSALTEFSAAYKSVTKTVVRGRILRDGIRMDGRGLADIR
PLDAEVQVIPRVHGSAIFQRGETQILGVTTLNMLKMEQQIDSLSPITKKRYLHHYNFPPY
STGETGRVGSPKRREIGHGFLAERALVPVLPSREDFPYAIRQVSEALGSNGSTSMGSVCA
STLSLLNAGVPLRAPVAGIAMGLVSDTVDGQVRYAALTDILGAEDALGDMDFKVAGTSEF
VTAIQLDTKLDGIPTSVLDGALKQAKEARTAILGVLNQAIDAPDEMAPTAPRVISVNIPV
DKIGELIGPKGKTINAIQDETGADISIEEDGTVYIGAVDGPSAEAARAQVNAIANPTNPE
VGESFLGTVVKIATFGAFVSLLPGKDGLLHISEVRKLAGGKRVENVEDVLGVGQKILVEI
TKIDDRGKLSLAPVLEEAADQEGRDAANHGSELPAEG
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtccagagatcaagttcgccgaggcagtcctcgacaacggcaagtacggaacg
cgcacggtccggttcgaggccggccgcctcgcgcagcaggcgcagggcgcggtcgccgcg
tacctcgacgaggacacgatgctgctgtccgccacctcggtgggcaagcacccgaaggac
aacttcgacttcttccccctgaccatcgacgtcgaggagcgcagctacgccgcgggcaag
atccccggctcgttcttccgccgcgagggccgcccctccaccgaggcgatcctcgtctgc
cgcctcatcgaccggccgctgcgcccgtcgttcatcacgggcctccgcaacgaggtccag
gtcgtcatcaccgtcctcagcatcgcgccggacgagttctacgacagcctcgccatcaac
gcggcgagcgcctcgagcatgctctcgggcatcccgttctccggccccatcgcgggtgtg
cgcctcgcgctcatcggcgaccagtgggtcgtcttcccgaagcattcgcagctcaaggag
gccgtcttcgacatcaccgtcgccggccgcgtcgtcaccgacgcccagggcaacgaggac
gtcgccatcatgatggtcgaggccgaggccaccgagggtgcctgggacctcatccagggc
ggcgccacgaagcccgacgaggccatcgtcgcgcagggcctcgaggccgcgaagccgttc
atccagcagctcgtcgccgcgcaggcctcgctcgcgcagcaggccgcgaagcccacggtc
gactaccccgtcttcctgccgtacgcgcaggagacctacgacgccgtcagcgcgctcgcc
ctcgacgagctgggcaccgtgtaccagatcgccgacaagatcgagcgccaggacgcggac
gacgccctcaagacccgcaccaaggaggccgtggccgtcaaggtcgaggccggcgagctg
ccgcagtcggcgctcaccgagttctccgcggcgtacaagtccgtcacgaagacggtcgtc
cgcggccggatcctccgcgacggcatccgcatggacggccgcggcctcgccgacatccgc
ccgctcgacgccgaggtgcaggtcatcccgcgcgtccacgggtcggccatcttccagcgc
ggcgagacccagatcctgggcgtcaccacgctgaacatgctcaagatggagcagcagatc
gactcgctgagccccatcacgaagaagcgctacctgcaccactacaacttcccgccctac
tccaccggtgagaccggtcgcgtcgggtcgccgaagcgtcgcgagatcgggcacggcttc
ctcgccgagcgcgccctcgtgccggtgctgccgagccgcgaggacttcccctacgcgatc
cgccaggtgtccgaggccctcgggtccaacggatccacgtcgatgggctcggtctgcgcc
tcgaccctgtcgctgctgaacgcgggcgtgccgctgcgcgcgcccgtcgccggcatcgcc
atgggcctcgtgtccgacaccgtcgacggccaggtccgctacgcggccctcaccgacatc
ctcggtgcggaggacgcgctcggcgacatggacttcaaggtcgcgggcacatccgagttc
gtcacggccatccagctggacacgaagctcgacggcatccccacgtcggtcctcgacggc
gcgctcaagcaggcgaaggaggcccgcacggccatcctcggcgtgctgaaccaggccatc
gacgcccccgacgagatggccccgaccgcgccccgcgtgatctcggtcaacatccccgtc
gacaagatcggcgagctgatcggcccgaagggcaagacgatcaacgccatccaggacgag
accggcgccgacatctccatcgaggaggacggcaccgtctacatcggcgccgtcgacggc
ccgtcggcggaggccgcgcgtgcgcaggtcaacgccatcgcgaacccgacgaacccggag
gtcggcgagtccttcctcggcaccgtcgtgaagatcgcgacgttcggcgccttcgtctcg
ctgctccccggcaaggacggcctgctgcacatcagcgaggtccgcaagctcgccggcggc
aagcgcgtcgagaacgtcgaggacgtgctcggcgtgggccagaagatcctggtggagatc
accaagatcgacgaccgcggcaagctctcgctcgctcccgtgctggaggaggccgccgat
caggagggccgcgacgccgccaaccacggctccgagctccccgcggagggctag
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