Clavibacter michiganensis subsp. insidiosus: VO01_10555
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Entry
VO01_10555 CDS
T03862
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cmh
Clavibacter michiganensis subsp. insidiosus
Pathway
cmh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VO01_10555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmh03400
]
VO01_10555
Enzymes [BR:
cmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VO01_10555
DNA repair and recombination proteins [BR:
cmh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VO01_10555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AJW79520
UniProt:
A0A0D5CJQ7
LinkDB
All DBs
Position
complement(2241950..2245582)
Genome browser
AA seq
1210 aa
AA seq
DB search
MILQGLIPALARASTFDDALASASRDADFSLTEGLQGPLLAGLLRQRIQRGIPGCLFVVT
ATGRESEGMRRSLDAVLPDAEILEFPAWETLPHERLSPSAEIVGKRIHALRRMEQWHAAL
GQGAREVPADEVRPLVVVASVRAALQPVADNLTELAPVQLATGSRGHDLSELAVRLVDLA
YSRVDMVTRRGEFAVRGGILDVFPPVSDHPVRVEFFGDEVDQMRPFAVADQRSLEEEITS
VELPPSRELLLSAPVRQRAREMQHEFPNLQQMLAKIAEGIPVEGMESLAPALVDRLVPVT
HYLPVDAAIAVVSPERVSTRAQSLADTNREFLDAAWNAATAGAQAPIDLASGDFLSLGRL
RDARGPRRWWTLSGFQATDVLPEDLGIDEVMTVRIQADPVPSFAGNADGAIEHVRERLSA
GWSVGVVAQGSGLVERADTVLREAGVPARVVEEFPTEPEPGIAYLLRSAIDAGFEMPEVK
LALLTESEFYGRAAGYDSRQVKKLATRRKNVVDPLQLKPGDHVVHTTHGIGRFVELTQRE
VSSGGRNAVKTRREYLVIEYAPSKRGYPGDKLFVPTDQLDLLSRYVGGEEPALSKMGGSD
WAAAKGKARRAVRDIAVELVKLYSARMASRGHSFPPDTPWQRELEEAFPFMETPDQLTVI
DEVKRDMESPIPMDRLVSGDVGFGKTEIAVRAAFKAVQDGKQVVMLVPTTLLVKQHFETF
SERFAGFPVHLRQLSRFQTDKESRETVKGLEDGSVDVVIGTHRLLTGNIAFKDVGLVIID
EEQRFGVEHKDALKKLKANVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTF
VGPNSEKQTAAAIRRELLREGQVFFVHNRVSSINRVASELAELVPEARVAVAHGKMSESM
LEQVIVDFWERKFDVLVSTTIIETGLDIANANTLIIDRADKYGLSQLHQLRGRVGRGRER
AYAYFLYDADKPLSETAHDRLSTIAANNELGSGMQVALKDLEIRGAGNLLGGEQSGHIQG
VGFDLYLRMIGEAVSTFRGDVAEGQTELRLELPVDAHIPEEYVDSERLRLEAYQKLSTAA
SPTATDDQIDRVIEELADRYGEPPVEVDNLVRVSRLRRVAQRAGLSEVVAMGPNLRIAPA
DLADSKQVRLQRMYPGSRLFAQTNAVTVPLPKRDGEPLPDAELVDWVRQLLDAVFVVEPA
PTAKESAPKS
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
gtgatcctccagggcttgatcccggcgctcgcgcgcgcctccacgttcgacgacgccctc
gcatcggcctcccgcgacgccgacttctccctcaccgaggggctccaggggccgctgctc
gcggggctcctgcgccagcgcatccagcgcggcatcccggggtgcctcttcgtcgtcacc
gccaccggccgcgagtccgagggcatgcgccgcagcctcgacgcggtgctcccggacgcc
gagatcctcgagttccccgcgtgggagacgctcccgcacgagcggctcagcccgagcgcc
gagatcgtcggcaagcggatccacgcgctgcgccgcatggagcagtggcacgccgcgctc
ggtcagggcgcccgcgaggtgccggccgacgaggtgcgcccgctcgtcgtcgtcgcgtcg
gtgcgcgcggccctccagcccgtcgccgacaacctcaccgagctcgcgcccgtgcagctc
gccaccggcagccgcggccacgacctctccgagctcgccgtccggctcgtcgacctcgcg
tactcgcgcgtcgacatggtcacgcgccgcggcgagttcgccgtgcgcggcggcatcctc
gacgtgttcccgcccgtctccgaccaccccgtgcgcgtggagttcttcggcgacgaggtc
gaccagatgcggccgttcgcggtcgccgaccagcgctcgctcgaggaggagatcacctcg
gtggagctgccgccgagccgcgagctgctgctgagcgcgcccgtgcgccagcgcgcccgc
gagatgcagcacgagttcccgaacctgcagcagatgctcgcgaagatcgccgagggcatc
ccggtggagggcatggagtcgctggcccccgcgctcgtcgaccggctcgtgcccgtcacg
cactacctgccggtggacgcggccatcgccgtggtctcgcccgagcgcgtgtccacccgc
gcgcagagcctcgctgacacgaaccgcgagttcctcgacgccgcgtggaacgccgccacc
gcgggcgcgcaggcgcccatcgacctcgcgtccggcgacttcctctccctcggacgcctg
cgcgacgcccgcgggccgcgccgctggtggaccctctccggcttccaggccaccgacgtg
ctcccggaggacctcgggatcgacgaggtcatgaccgtgcgcatccaggcggatcccgta
ccgagcttcgcgggcaacgccgacggcgccatcgagcacgtgcgcgagcgcctctctgcc
ggctggagcgtgggcgtcgtcgcccagggatccggcctcgtcgagcgcgccgacaccgtg
ctccgcgaggcgggcgtcccggctcgcgtggtcgaggagttccccaccgagcccgagccc
ggcatcgcctacctgctccgctccgccatcgacgcgggcttcgagatgcccgaggtgaag
ctcgcgctcctcaccgagagcgagttctacgggcgcgcggccggctacgacagccgccag
gtcaagaagctcgcgacccggcgcaagaacgtggtggatccgctgcagctcaagcccggc
gaccacgtcgtgcacaccacgcacggcatcggcaggttcgtggagctgacgcagcgcgag
gtctcgtcgggcggccgcaacgcggtgaagacccggcgcgagtacctcgtcatcgagtac
gcgccctcgaagcgcggctacccgggcgacaagctcttcgtgcccaccgaccagctcgac
ctcctcagccggtacgtcggcggggaggagcccgccctgagcaagatgggcggcagcgac
tgggccgccgcgaagggcaaggcgcgccgggccgtccgcgacatcgcggtcgagctcgtg
aagctctactccgcgcgcatggcgtcgcgcggccactcgttcccgccggacaccccgtgg
cagcgcgagctcgaggaggcgttccccttcatggagacgcccgaccagctcaccgtcatc
gacgaggtcaagcgcgacatggagagccccatccccatggaccgcctcgtctcgggcgac
gtcggcttcggcaagacggagatcgccgtgcgcgccgcattcaaggccgtgcaggacggc
aagcaggtcgtgatgctcgtgcccacgacgctgctcgtgaagcagcacttcgagaccttc
tccgagcgcttcgccgggttccccgtgcacctgcgccagctcagccgcttccagaccgac
aaggagtcgcgcgagaccgtcaaggggctcgaggacggctcggtcgacgtggtcatcggc
acccaccgcctgctcacggggaacatcgcgttcaaggacgtgggcctcgtcatcatcgac
gaggagcagcggttcggcgtggagcacaaggacgcgctgaagaagctgaaggccaacgtc
gacatcctcgcgatgtcggccacgccgatcccgcgcacgctcgagatggcggtcacgggc
atccgcgagatgtcgacgctcgcgacgccgccggaggaccggcacccgatcctcaccttc
gtgggcccgaacagcgagaagcagaccgcggccgccatccgccgcgagctgctgcgcgag
gggcaggtgttcttcgtgcacaaccgcgtgtcgagcatcaaccgggtcgcgtcggagctg
gccgagctggtgcccgaggcgcgcgtcgccgtggcccacggcaagatgagcgagtcgatg
ctcgagcaggtcatcgtcgacttctgggagcggaagttcgacgtgctcgtgtcgaccacc
atcatcgagaccggcctcgacatcgccaacgcgaacacgctcatcatcgaccgggccgac
aagtacggcctcagccagctgcaccagctgcgcggccgcgtcggccgcgggcgggagcgc
gcgtacgcgtacttcctctacgacgccgacaagccgctgtccgagacggcgcacgaccgg
ctgtccaccatcgcggcgaacaacgagctgggatccggcatgcaggtcgcgctcaaggac
ctcgagatccgcggtgcgggcaacctgctgggcggcgagcagtccggccacatccagggc
gtggggttcgacctctacctccgcatgatcggcgaggccgtctccacgttccgcggcgac
gtcgccgagggccagaccgagctgcggctcgagctgccggtggatgcgcacatccccgag
gagtacgtggacagcgagcggctgcgcctcgaggcgtaccagaagctctccaccgcggcg
tcgcccacggccaccgacgaccagatcgaccgggtcatcgaggagctggcggaccgctac
ggcgagccgcccgtggaggtcgacaacctcgtgcgcgtctcgcgtctgcgccgcgtggcg
cagcgggccggcctcagcgaggtcgtcgcgatggggccgaacctgcgcatcgctccggcc
gacctcgcggacagcaagcaggttcgcctgcagcgcatgtacccgggcagccgcctcttc
gcgcagaccaacgccgtcaccgtgccgctgcccaagcgcgacggcgagccgctgcccgac
gccgagctggtcgactgggtgcggcagctgctcgacgccgtcttcgtggtggagccggcg
ccgacggcgaaggagtcggcgccgaagtcctga
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