Clavibacter michiganensis subsp. insidiosus: VO01_13280
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Entry
VO01_13280 CDS
T03862
Name
(GenBank) pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
cmh
Clavibacter michiganensis subsp. insidiosus
Brite
KEGG Orthology (KO) [BR:
cmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cmh03016
]
VO01_13280
Enzymes [BR:
cmh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
VO01_13280
Transfer RNA biogenesis [BR:
cmh03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
VO01_13280
Prokaryotic type
VO01_13280
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Ala_racemase_N
Polyketide_cyc2
Motif
Other DBs
NCBI-ProteinID:
AJW79963
UniProt:
A0A0D5CJZ8
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All DBs
Position
complement(2828425..2829426)
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AA seq
333 aa
AA seq
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MSADAEAGDAGTRLRLDIAYDGTGFAGWAKQPGLRTVQGALEGALAQLLARTPPAPTLVV
AGRTDAGVHATGQVAHVDLTDAQIASLDRPPRGRGADAAGEGPHAPSVERAAAALARRMN
GVLGPRSDAVVLACAPAPDGFDARFSATWRAYRYRISDTSGPRDPLQRHRTVEVPVALDA
AVLQQAADALLGLHDFAAYCKPREGASTIRTLQDLTWARAADGALEAAVRADAFCHSMVR
ALVGACVAAASGRVGVARLRELLELRERTSEFTVMPARGLVLERVGYPPDAELAARNEVT
RNRRAAHEVDPVTEGADDAARDLARLADTPGIA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcggatgccgaggcgggtgacgccggcacgcgcctccgcctcgacatcgcgtac
gacggcacggggttcgccggctgggcgaagcagcccgggctccgcacggtgcagggcgcg
ctcgagggcgcgctcgcgcagctgctcgcccgcacgccgccggcgccgacgctcgtcgtc
gccgggcggaccgacgcgggcgtgcacgccacgggccaggtcgcgcacgtcgacctcacg
gacgcgcagatcgcgtccctcgaccgtccgccgcggggccgcggcgccgacgccgcgggg
gaggggccacacgctccctccgtcgagcgcgccgcggcggccctcgcgcgccggatgaac
ggcgtgctcggcccacggtccgacgccgtcgtgctcgcgtgcgcccccgcgcccgacggc
ttcgacgcgcgcttctccgcgacgtggcgggcgtaccgctaccggatctccgacacctcc
ggcccccgcgaccccctccagcggcaccggaccgtcgaggtcccggtcgccctcgacgcg
gccgtgctgcagcaggcggctgacgcgctgctgggcctccacgacttcgccgcgtactgc
aagccgcgcgagggggcgtcgaccatccgcacgctgcaggacctgacctgggcccgcgcg
gccgacggcgcgctcgaggcggcggtccgggcggacgccttctgccacagcatggtgcgc
gcgctcgtcggcgcgtgcgtcgcggcggcgtcgggacgcgtcggcgtcgcgcggctccgc
gagctgctggagctgcgcgagcggacgagcgagttcacggtgatgcccgcgcgcggcctc
gtgctcgagcgggtgggctacccgcccgacgcggagctcgcggcgcgcaacgaggtcacc
cggaaccggcgtgcggcgcacgaggtggatcccgtcacggagggcgccgacgatgccgcc
cgcgacctggcgcggctggccgacacgcccgggattgcctga
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