Clavibacter michiganensis subsp. insidiosus: VO01_13535
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Entry
VO01_13535 CDS
T03862
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cmh
Clavibacter michiganensis subsp. insidiosus
Pathway
cmh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cmh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VO01_13535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmh03021
]
VO01_13535
03400 DNA repair and recombination proteins [BR:
cmh03400
]
VO01_13535
Enzymes [BR:
cmh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VO01_13535
Transcription machinery [BR:
cmh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VO01_13535
DNA repair and recombination proteins [BR:
cmh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VO01_13535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AJW80007
UniProt:
A0A0D5CL63
LinkDB
All DBs
Position
complement(2866555..2870454)
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVTTFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSAVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEDARHEDMPGLENELRLEIKTLQDQRDSQIAERLGRLETD
LAALEAEGAKSDQKRRAKDGAEKEMGQTRKAFDEDISRLERVWEEFRSLKVGELKPEDAV
FHELQDRFGIYFEAHMGAEAIQKRLEAFDLEAEGELLREQIATGKGQKKIRAIKRLRVVS
SFLATGNSPAAMVLQVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
GQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTLKEGVAGEGR
AFSSVAEAILAKDQLSLDLNAKVRIRLHDIYFGEGEAPEGVELDEKGKTVGPVLLETTLG
RALFNETLPVDYPYIEAVADKGKLSEIVNDLAERYPKVEVAAALDRIKDAGFYWATRSGV
TVALSDVLTPPTKAAILSGYEKQAAKVQGQFEKGLTTNAERRQELIEIWNKATAEVAKAM
EDNLPADNNINRMVSSGARGNWMQVRQIAGMRGLVSNPKGEIIPRPIVHSYREGLTVAEY
FIASHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTGRGLDLPIATKGADGS
SVRDSNVENSVYARSLAADAVNEAGEVVAPAGSDVGDVMIDHLIAVGVHEIKVRSVLTCE
SAVGVCAACYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQG
LPRVQELFEARTPKGASPIAEAAGRITIEDTDRSRKVILTPDNGDEPHIYPVLKRATLLV
EDGQHVELGQQLHVGAIDPKEVLRVKGVREVQKHLVGGVQGVYRSQGVPIHDKHIEVIVR
QMLRKVTVVEHGDTDLLPGELVDRARYNEVNRATLTEGKKTASARQEVMGITKASLATES
WLSAASFQETTRVLTQAAMEGKSDPLMGLKENVIIGKLIPAGTGLAKYRDVTVTATEEAK
AERYPNRIFTDESVFNESDLSFVDFDSFSSDDYTPGTYN
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtaacaactttcgatgagctgcggatcggcctggccacggccgacgacatc
cgccgctggtcgcacggtgaggtcaagaagcccgagaccatcaactaccgcacgctgaag
cccgagaaggacggcctcttcggagagcagatcttcggacccagccgcgactgggagtgc
tcctgcggcaagtacaagcgggtgcgcttcaagggcatcgtctgcgagcgctgcggcgtg
gaggtcaccaagtccgcggtccgccgcgagcgcatgggccacatcgagctcgccgcgccc
gtcacgcacatctggtacttcaagggcgtgccgtcgcgcctcggctacctgctcgacatg
gcgcccaaggacctcgagaaggtcatctacttcgccgcgtacatggtgatcagcgtggac
gaggacgctcgccacgaggacatgccgggcctcgagaacgagctccggctcgagatcaag
accctgcaggaccagcgcgacagccagatcgccgagcgcctcgggcgtctcgagaccgac
ctggccgcgctggaggccgagggcgccaagagcgaccagaagcgccgcgcgaaggacggc
gccgagaaggagatgggtcagacgcgcaaggcgttcgacgaggacatctcgcgtctcgag
cgcgtctgggaggagttccgcagcctcaaggtcggcgagctgaagcccgaggacgccgtc
ttccacgagctgcaggaccgcttcggcatctacttcgaggcccacatgggcgccgaggcg
atccagaagcgcctggaggccttcgacctcgaggccgagggggagctgctccgcgagcag
atcgccaccggcaagggccagaagaagatccgcgccatcaagcgcctgcgcgtcgtcagc
tccttcctcgccaccggcaactcgccggccgcgatggtgctgcaggtcgtcccggtcatc
ccgccggagctgcgcccgatggtgcagctcgacggaggccgcttcgcgaccagcgacctg
aacgacctgtaccgccgggtcatcaaccgcaacaaccgcctccgtcgtctgctggatctc
ggcgcccccgagatcatcgtcaacaacgagaagcgcatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgtcccgtcacgggcaccggcaaccgcgcgctcaag
tccctcagcgacatgctgaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtggactactcgggccgctcggtcatcatcgtcgggccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggcgctcgagctgttcaagccgttcgtcatcaagcgcctg
atcgacctgagccacgcccagaacatcaaggccgccaagcgcatggtcgagcgcagccgc
ggacaggtctgggacgtgctcgaggagatcatccgcgagcgccccgtgctgctcaaccgc
gcgcccacgctccaccgtctgggcatccaggcgttcgagccccagctcgtggagggcaag
gccatccagctgcacccgctcgtctgcgccgcgttcaacgcggacttcgacggcgaccag
atggccgtccacctgcccctgtcggtcgaggcccaggccgaggcgcgcatcctgatgctc
gcctcgaacaacatcctcaagccgtcggacggacgcccggtcaccctgcccacgcaggac
atgatcatcggcctgcaccacctgaccaccctcaaggagggcgtcgccggtgagggtcgc
gcgttcagctcggtggccgaggccatcctggcgaaggaccagctctctctggacctcaac
gccaaggtgcgcatccgcctgcacgacatctacttcggcgagggcgaggcgcccgagggc
gtcgagctcgacgagaagggcaagacggtcggtcccgtgctgcttgagaccaccctcggt
cgcgcgctgttcaacgagaccctgccggtcgactacccctacatcgaggccgtcgccgac
aagggcaagctctccgagatcgtcaacgacctcgccgagcggtacccgaaggtggaggtc
gcggcagcgctcgaccggatcaaggacgcgggcttctactgggccacgcgctccggcgtc
acggtcgccctctccgacgtgctgaccccgcccaccaaggcggccatcctgtcgggctac
gagaagcaggccgccaaggtccagggccagttcgagaagggcctcacgacgaacgccgag
cgtcgtcaggagctcatcgagatctggaacaaggccaccgccgaggtcgcgaaggcgatg
gaggacaacctccccgccgacaacaacattaaccgcatggtgtcctccggggcacgaggc
aactggatgcaggtccgccagatcgccggcatgcgcggcctcgtgtcgaacccgaagggc
gagatcatcccccgcccgatcgtccactcgtaccgcgagggcctcacggtggcggagtac
ttcatcgcctcccacggcgcccgcaagggactggccgacaccgcgctgcgcaccgccgac
tccgggtacctcacccgtcgtctggtggacgtgtcgcaggacgtcatcatccgcgaggac
gactgcggcaccggccgtgggctcgacctgccgatcgccacgaagggcgctgacggctcg
tccgtccgcgactccaacgtggagaactcggtgtacgcccgctcgctggccgccgacgcg
gtcaacgaggccggcgaggtcgtcgcccccgcgggcagcgacgtcggcgacgtcatgatc
gaccacctgatcgcggtcggcgtgcacgagatcaaggtgcgctcggtcctcacgtgcgag
tccgccgtcggcgtgtgcgcggcctgctacggccgctcgctcgccacgggcaagctcgtc
gacatcggcgaggccgtcggcatcatcgcggcccagtcgatcggcgagcccggcacgcag
ctcacgatgcgcaccttccacaccggtggtgtggcatcggcggacgacatcacgcagggt
ctgccccgcgtgcaggagctcttcgaggcccgcacccccaagggtgcgtcgcccatcgcg
gaggccgccggtcgcatcacgatcgaggacacggatcgcagccgcaaggtgatcctgacc
ccggacaacggcgacgagccgcacatctacccggtgctcaagcgcgcgaccctcctcgtc
gaggacggccagcacgtcgagctcgggcagcagctgcacgtcggcgccatcgacccgaag
gaggtcctccgggtcaagggcgtgcgcgaggtgcagaagcacctcgtgggcggtgtccag
ggcgtctaccgctcgcagggcgtcccgatccacgacaagcacatcgaggtcatcgtgcgg
cagatgctgcgcaaggtcacggtcgtcgagcacggcgacacggacctcctccccggtgag
ctggtcgaccgggcccgctacaacgaggtcaaccgcgccacgctgacggagggcaagaag
accgcctccgcccgccaggaggtcatgggaataaccaaggcctcgctcgcgaccgagtcg
tggctgtcggccgcgtccttccaggagacgacccgcgtgctcacgcaggccgccatggag
ggcaagtccgacccgctgatgggtctcaaggagaacgtcattatcggcaagctgatcccg
gccgggacggggctcgcgaagtaccgcgacgtcaccgtcaccgcgacggaggaggccaag
gccgagcgctacccgaaccgcatcttcacggatgagtcggtgttcaacgagtccgacctg
agcttcgtcgacttcgacagcttcagctcggacgactacacgcccggcacctacaactag
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