KEGG   Clavibacter michiganensis subsp. insidiosus: VO01_13620
Entry
VO01_13620        CDS       T03862                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
cmh  Clavibacter michiganensis subsp. insidiosus
Brite
KEGG Orthology (KO) [BR:cmh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cmh03400]
    VO01_13620
Enzymes [BR:cmh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     VO01_13620
    5.6.2.6  RNA 3'-5' helicase
     VO01_13620
DNA repair and recombination proteins [BR:cmh03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    VO01_13620
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr WH3_Lhr WH2_Lhr WH4_Lhr DEAD Helicase_C ResIII AlkZ-like AAA_25 DUF6406 AAA_22 Cas3-like_C_2
Other DBs
NCBI-ProteinID: AJW80024
UniProt: A0A0D5CL37
LinkDB
Position
2885769..2890589
AA seq 1606 aa
MDPVLARFSPATREWFQGAFPGPTAAQTGAWEAVQRGSHALVVAPTGSGKTLAAFLWSID
RLASRPAPEDPMRRTRVLYISPLKALAVDVERNLRSPLVGIVQTAKRLGAEPPEVTVGVR
SGDTPAADRRSLAKTPPDILITTPESLFLMLTSAARETLAGVETIIVDEVHAVAATKRGS
HLALSLERLDALLEKPAQRIGLSATVRPPEEVARFLGGRSPVSIVSPKNTKEFDLRVIVP
VDDMTELGTTAPLEGSAAQGDAPQQGSIWPHVEEGIVDLVLQHTSSIVFTNSRRLAERLT
ARLNEIYTGRIEGGRIDAEGRAIAGGSATAGAEADAVPVLAGAAAGSGSSRPVDATAFSA
TRRAPARPPAEVMAQAGSTEGADPVLAKAHHGSVSKEQRALIEDDLKSGRLRCVVATSSL
ELGIDMGDVDLVVQVEAPPSVASGLQRVGRAGHQVGEVSRGVIFPKHRADLIHSAVAAER
MASGQIESLRVPANPLDVLAQQTVAAVALEPLGVEEWFDIVRRSAPFATLPRSAYEATLD
LLSGRYPSDEFAELRPRIVWDRDEGTIEGRPGAQRLAVTSGGTIPDRGLFGVFMVGEKAS
RVGELDEEMVYESRVGDVFALGATSWRIQEITHDRVLVTPAFGEPGKLPFWKGDGLGRPL
ELGRAIGAFVRELSGSAADDARARAGRVGLDDRAVNNLLAFLDDQRKATGHVPNDRTLVV
ERFRDELGDWRVVLHSPYGMQVHAPWALAVGARVTELYGIDGATMANDDGIVVRIPETDG
EPPGADLFVFEPDELDAIVTREVGGSALFASRFRECAARALLLPRYNPGRRSPLWQQRQR
ASQLLDVARKFPAFPIVLETVREVLQDVYDLPALTSLAKDIEARRITIVETTTEDASPFA
RSLLFSYVGAFMYEGDSPLAERRAAALSLDAGLLSELLGRAELRELLDPAVIARTELELQ
RLAPDRRAKGLEGVADLLRILGPLDADEVAARLEPEEAGSAADHLDALVAGKRALRVSFG
GRPRVAAIEDASRLRDALGVPLPIGTPLAFVEPVADPLGDLVGRYARTHGPFTIADAASG
IGLGSAVIADTLARLGAQRRVVEGEFRPGASGSEWCDVEVLRRLRSRSLAALRSEVEPVE
RAAFARFLPAWQHVAGADRERGLRGVDGVLQVIEQLAGAPVPASAWETLVLPARVRDYTP
AFLDELTSTGEVIWSGAGTLAGADGWVSLHLADQVALTLPEPDAHDTDELQREILTTLGT
GGGYFFRQLSDAVGSTDDKALVTALWDLVWAGLVTNDTLSPLRALLAGGSTAHKTPQRAP
RGRMYRGGRMPRPDMPTRTGPSTAAGRWSIVPLAETDATVRAAGTAELLLERYGVVTRGS
VMTERVPGGFALTYKVLAGFEDTGRARRGYFIETLGAAQFSTGGTVDRLRGFTRDPDAGE
RPLNALTLAATDPANAYGAALPWPRLDGSSPDGDGGAGTGAGTEAAGDAGSADASPTVAE
SGSVDARGERPTGHRAGRKAGALVVLVDGELVLYVERGGKTVLLFDDDEAVIRAAAESLG
GIVRRGGVAKLAIEKVNGGFILGTPLGTALQEHGFSATPRGLRMRS
NT seq 4821 nt   +upstreamnt  +downstreamnt
atggatcccgtcctcgcgcgcttctccccggccacccgggagtggttccagggcgcgttc
cccggccccaccgcggcgcagaccggcgcgtgggaggccgtgcagagggggtcgcacgcg
ctcgtcgtggcgcccaccggatccggcaagacgctcgcggcgttcttgtggtcgatcgac
cggctcgcctcgcggcccgcgccggaggatccgatgcggcgcacgcgcgtcctctacatc
tcgccgctcaaggcgctcgcggtcgacgtggagcgcaacctccggtcgccgctcgtgggc
atcgtgcagacggcgaagcggctgggggccgagccgcccgaggtcacggtgggcgtgcgc
tccggcgacaccccggcggccgaccggcgctcgctcgcgaagacgccgccggacatcctc
atcaccacgcccgagtcgctgttcctcatgctcacgtccgccgcgcgcgagacgctcgcg
ggggtcgagacgatcatcgtcgacgaggtgcacgcggtcgcggcaaccaagcgcggcagc
cacctcgcgctctcgctcgagcggctcgacgcgctgctcgagaagccggcccagcgcatc
gggctgtccgccaccgtgcgacctcccgaggaggtggcgcggttcctcggcgggcgctcg
cccgtctcgatcgtgtcgccgaagaacaccaaggagttcgacctgcgggtcatcgtgccg
gtcgacgacatgaccgagctcggcaccacggcgccgctcgaggggtcggcggcgcagggc
gacgctccgcagcagggatccatctggccgcacgtggaggagggcatcgtcgacctcgtg
ctccagcacacgtcgtccatcgtcttcacgaacagcaggcggctggcggagcggctcacg
gcgcggctcaacgagatctacacgggacgcatcgagggcgggcggatcgacgccgagggg
cgggcgatcgcgggcgggtcggcgacggccggcgcggaggccgacgccgttcccgtgctc
gcgggcgccgcggccggatccgggtcgtcgcggcccgtcgacgccaccgccttctccgcc
acgcgccgcgcgcccgcccgaccgcccgcggaggtcatggcgcaggccgggagcaccgag
ggggcggatcccgtgctcgccaaggcgcaccacggatccgtctcgaaggagcagcgcgcc
ctcatcgaggacgacctgaagtcagggcgcctgcgctgcgtggtcgccacctcgagcctc
gagctcggcatcgacatgggcgacgtcgacctcgtcgtgcaggtcgaggcgccgccgtcg
gtcgcgagcgggctgcagcgcgtcggccgcgccgggcaccaggtgggcgaggtctcgcgc
ggcgtcatcttccccaagcaccgggccgacctcatccactcggccgtcgccgccgagcgc
atggcgagcgggcagatcgagtcgctgcgcgtgcccgcgaacccgctcgacgtgctcgcg
cagcagaccgtcgcggccgtggcgctcgagccgctcggcgtcgaggaatggttcgacatc
gtgcggcggagcgcgccgttcgcgaccctgccgcgctccgcgtacgaggccacgctcgac
ctcctgagcggccggtacccgtccgacgagttcgccgagctgcggccccgcatcgtgtgg
gatcgcgacgagggcaccatcgaggggcgtccgggcgcgcagcggctcgcggtcacctcc
ggcggcaccatccccgaccgcggcctgttcggcgtgttcatggtcggcgagaaggcgtcg
cgcgtgggcgagctcgacgaggagatggtctacgagtcgcgcgtcggcgacgtgttcgcg
ctgggggccacgagctggcggatccaggagatcacgcacgaccgcgtgctcgtgacgccc
gcgttcggcgagccggggaagctgccgttctggaagggcgacgggctcggccggccgctc
gagctggggcgcgccatcggggcgttcgtgcgggagctgtccggatccgccgcggacgac
gcccgcgcgagggccggccgcgtgggcctcgacgaccgcgccgtgaacaacctcctcgcg
ttcctcgacgaccagaggaaggccaccggccacgtgccgaacgaccgcaccctcgtggtc
gagcggttccgcgacgagctcggcgactggcgcgtggtgctgcactccccgtacgggatg
caggtgcacgcgccgtgggcgctcgcggtcggggcgcgggtcaccgagctgtacggcatc
gacggcgcgaccatggccaacgacgacggcatcgtggtgcgcatccccgagacggacggc
gagccgccgggggccgacctcttcgtgttcgagcccgacgagctcgacgcgatcgtcacg
cgcgaggtgggcggttccgccctgttcgcgtcgcggttccgcgagtgcgccgcccgcgcg
ctcctgctgccgcgctacaaccccggccgccgctcgccgctgtggcagcagcgccagcgc
gcgtcgcagctgctcgacgtggcgcggaagttccccgccttcccgatcgtgctcgagacg
gtgcgcgaggtgctgcaggacgtctacgacctgcccgcgctcacgtcgctcgcgaaggac
atcgaggcgcggcggatcacgatcgtcgagaccaccacggaagacgcgtcgcccttcgcg
cgcagcctcctgttcagctacgtcggcgcgttcatgtacgagggcgacagcccgctcgcc
gagcgccgggccgccgcgctctcgctcgacgcgggcctgttgtccgagctgctggggcgg
gcggagctgcgcgagctgctggatccggccgtcatcgcgcgcacggagctggagctgcag
cggctcgcgcccgaccgccgcgcgaaggggctggagggcgtggcggatctgctgcggatc
ctcggcccgctcgacgccgacgaggtcgcggcgcggctcgagcccgaggaggcgggctcc
gccgccgaccacctcgacgcgctcgtcgcgggcaagcgcgcgctccgcgtctcgttcggc
ggcaggccgcgcgtggccgccatcgaggacgcgagccggctgcgcgacgccctcggggtg
ccgctgcccatcggcacgccgctcgcgttcgtcgagccggtcgccgatccgctgggcgac
ctcgtcggccggtacgcccgcacgcatgggccgttcaccatcgcggacgcggcctcgggc
atcggcctcggatccgcggtcatcgccgacacgctcgcccggctcggcgcccagcggcgc
gtcgtcgagggcgagttccggccgggcgcgtccggcagcgagtggtgcgacgtcgaggtg
ctgcggcgcctgcgcagccgctcgctcgcggcgctccgcagcgaggtcgagccggtcgag
cgggccgcgttcgcgcgcttcctgccggcgtggcagcacgtggccggcgcggatcgcgag
cgcgggctccgcggggtcgacggcgtgctgcaggtcatcgagcagctcgcgggcgcgccc
gtgcccgcctccgcgtgggagacgctcgtgctgccggcgcgcgtgcgcgactacacgccg
gccttcctcgacgagctcacgtcgacgggcgaggtcatctggtcgggcgccggcacgctc
gcgggcgccgacggctgggtcagcctgcacctcgccgaccaggtcgcgctcacgctgccc
gagcccgacgcgcacgacaccgacgagctgcagcgcgagatcctcaccacgctcggcacg
ggcggcggctacttcttccggcagctgagcgacgccgtcggatccacggacgacaaggcg
ctcgtcaccgcgctgtgggacctcgtgtgggcgggcctcgtcacgaacgacacgctctcg
ccgctgcgggcgctgctcgccggcggatccaccgcgcacaagacgccgcagcgggcgccg
cgcgggcgcatgtaccggggcgggcggatgccgcggcccgacatgcccacgcgcaccggg
ccctcgacggcggccgggcgctggtcgatcgtgccgctcgccgagaccgacgccaccgtg
cgcgccgcgggcacggccgagctgctgctggagcggtacggcgtggtcacgcgcggatcc
gtcatgaccgagcgcgtgcccggcgggttcgcgctcacgtacaaggtgctcgcgggcttc
gaggacaccggacgcgcgcgccgcgggtacttcatcgagacgctgggcgccgcgcagttc
tccacgggcggcacggtggatcggctgcgcgggttcacgcgggatccggacgcgggcgag
cggccgctgaacgcgctgacgctcgcggccacggatccggcgaacgcgtacggcgcggcg
ctgccctggccgcggctcgacgggtcgtcgcccgacggggacggcggcgcgggcacgggc
gccggcacggaggcggccggcgacgcgggatccgccgacgcgtcgcccaccgtcgcggag
tccggcagcgtcgacgcgcgcggcgagcgccccaccgggcaccgcgcgggccgcaaggcg
ggcgcgctcgtggtgctggtcgacggcgagctcgtgctctacgtggagcgcggcggcaag
accgtgctgctcttcgacgacgacgaggcggtgatccgcgcggcggccgagtcgctcggc
gggatcgtgcggcgcggcggggtcgcgaagctcgcgatcgagaaggtgaacggcgggttc
atcctgggcaccccgctcggcacggcgctccaggagcacggcttctcggcgacgccgcgc
gggctgcggatgcggtcgtga

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