Clavibacter michiganensis subsp. michiganensis: CMM_0534
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Entry
CMM_0534 CDS
T00529
Symbol
phrB
Name
(GenBank) Deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
cmi
Clavibacter michiganensis subsp. michiganensis
Brite
KEGG Orthology (KO) [BR:
cmi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmi03400
]
CMM_0534 (phrB)
Enzymes [BR:
cmi01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
CMM_0534 (phrB)
DNA repair and recombination proteins [BR:
cmi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
CMM_0534 (phrB)
Prokaryotic type
CMM_0534 (phrB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
CAN00559
UniProt:
A5CNC2
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All DBs
Position
complement(618856..620382)
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AA seq
508 aa
AA seq
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MSDDDAPDHGSADREGAEEAHGPSIVWLRDDLRVADNPALHAAVERGEPIVVLYVLDEES
DGIRPLGGAARWWLHMSLSRLAESLRELGSDLVLRRGKAADVVDDLVREIGAGAVLWNRR
YGGAEIAVDTAIKKDLGDRGLDVRSFQGSLLVEPWTVTNKQGEPFRVYTPFWKAAQEREE
PRKPLPAPKELDAPREAPRSDDLDGWGLLPTKPDWAAGLRESCDPGEAAGLQRLEDFVHH
ELEDYAAQRDEPAAMTTSRLSAYLRWGEVSPFQVWHRIQRTRGKKVGGDEVNATKFLSEL
GWREFSYHLLYHQPDLATRNFVPRFDAFPWDEPTDETLGAWQRGETGVPLVDAGMRALWK
DGHLHNRVRMVVASFLIKNLLIDWRHGEQWFWDTLVDADAANNAASWQWVAGSGADAAPY
FRVFNPVLQGQKFDPSGEYIRSYVPELAHAPRDVVHEPWKAMGDLVASAEDGADDSDDGG
LAAYPAPIVDLKESRQRALAAYDEIKDR
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgacgacgcccccgaccacggatccgcggaccgggagggcgccgaggaggcg
cacggcccgagcatcgtgtggctgcgcgacgacctccgcgtggccgacaatccggcgctg
cacgcggccgtcgagcggggcgagcccatcgtggtgctgtacgtgctcgacgaggagagc
gacgggatccgcccgctcggcggcgccgcccgctggtggctgcacatgagcctgtcgcgc
ctcgcggagtcgctgcgggagctcggatccgacctggtgctgcgccgcgggaaggccgcc
gacgtcgtcgacgacctcgtgcgggagatcggcgcgggcgcggtgctgtggaaccggcgc
tacggcggggccgagatcgcggtcgacaccgccatcaagaaggacctcggcgaccggggg
ctcgacgtccgcagcttccagggatcgctgctggtcgagccgtggacggtgacgaacaag
cagggcgagccgttccgcgtgtacacgccgttctggaaggccgcgcaggagcgggaggag
ccgcggaagccgctgcccgcgccgaaggagctcgacgcgccgcgggaggcaccccgctcg
gacgatctcgacggctgggggctgctgccgacgaagcccgactgggcggccggcctccgc
gagtcgtgcgatcccggcgaggcagccggcctgcagcgcctcgaggacttcgtccaccac
gagctcgaggactacgccgcccagcgcgacgagcccgcggcgatgaccacgtcgcggctg
tcggcgtacctgcgctggggcgaggtgagcccgttccaggtgtggcaccggatccagcgc
acgcgcgggaagaaggtgggcggcgacgaggtcaacgccaccaagttcctctccgagctc
ggatggcgcgagttcagctaccacctgctgtaccaccagccggatctcgcgacccgcaac
ttcgtgccccgcttcgacgcgttcccgtgggacgagccgaccgacgagacgctcggcgcg
tggcagcggggcgagacgggggtgccgctcgtcgacgccggcatgcgcgcgctctggaag
gacggccacctgcacaaccgcgtgcggatggtggtggcgtcgttcctcatcaagaacctg
ctgatcgactggcgccacggcgagcagtggttctgggacacgctcgtggacgcggatgcg
gccaacaacgcggcgagctggcagtgggtcgcgggatccggcgccgacgccgccccctac
ttccgcgtgttcaaccccgtgctgcagggacagaagttcgacccgtcgggcgagtacatc
cgctcgtacgtgcccgagctggcgcacgcgccgcgggacgtcgtgcacgagccgtggaag
gcgatgggcgacctcgtcgcgagcgcggaggacggcgcggacgactcggacgacggcggg
ctcgcggcgtacccggcgccgatcgtcgacctgaaggagtcccgtcagcgggccctcgcg
gcgtacgacgagatcaaggaccggtga
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