Clavibacter michiganensis subsp. michiganensis: CMM_1156
Help
Entry
CMM_1156 CDS
T00529
Name
(GenBank) unnamed protein product; Region start changed from 1322556 to 1322682 (-126 bases)
KO
K03628
transcription termination factor Rho
Organism
cmi
Clavibacter michiganensis subsp. michiganensis
Pathway
cmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMM_1156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmi03021
]
CMM_1156
03019 Messenger RNA biogenesis [BR:
cmi03019
]
CMM_1156
Transcription machinery [BR:
cmi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CMM_1156
Messenger RNA biogenesis [BR:
cmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CMM_1156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
NACHT
Motif
Other DBs
NCBI-ProteinID:
CAN01200
UniProt:
A5CQ47
LinkDB
All DBs
Position
1322682..1325153
Genome browser
AA seq
823 aa
AA seq
DB search
MTDVDTRATTADLSALRVSQLQAIASELGIPGGSKLRKGELVTAISEIQAAGGTTAPADE
MAPEAAAPAETSEAAPAAAEPAAAVEEAPASEPVVADAAPIADAVPAADATPAEAPVAAT
PAVDAPAEQPARSGRGSRRASTARIVPERIAETVEAPAAEPAGTGLEARIAEATAGRTQE
PLTEAPRTEAPARSGRGSRRATSSGVVDPATEAPRQAAQHVNSGQTADQLVPADAQADAQ
APAVDAPTEEQAPAQRSGRGRRRGGRDAQDGADRAAAQDAPAPDTADESPAAEQADRQRD
DRDGDDQGGRRDDQGREGREGGRNRSRNRRNRDRGRDQDDQQQNGRDQGQPQQAPREPDA
DDEAQEEARTGRQRQNGRGQGDRTQDVRADQARADLGRDDDRGGRSRYRDRKRGRGQGGD
DFEPEVTEDDVLLPVAGILDVLDNYAFVRTSGYLPGTNDVYVSLGQVKKHSLRKGDAIVG
AIRQPRENDSQSRQKYNAIVKIDSVNGLPPEEAANRVEFGKLTPLYPQDRLSLETEPNKL
TTRIIDLVSPIGKGQRGLIVSPPKAGKTLVLQAIANAIATNNPEVHLMVVLVDERPEEVT
DMQRTVKGEVIASTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLA
APASGRILSGGVDSSALYPPKRFFGAARNIEHGGSLTILATALVETGSKMDEVIFEEFKG
TGNMELRLSRALADKRIFPAVDVNASGTRREEMLMGADEVKVTWKLRRALAGLEQQQALE
IVLSRLKETTSNVEFLMKVQASMPNTGNGVSHQSHGHGAHEKG
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtcgacacccgcgccaccaccgcggacctgagcgcgctccgcgtctcgcag
ctccaggcgatcgcctccgagctcgggatcccgggcggctccaagctccggaagggcgag
ctcgtgaccgcgatctccgagatccaggcagccggggggaccaccgcccccgccgacgag
atggcccccgaggccgccgcgcccgccgagacgagcgaggcggcccccgcggccgccgag
cccgccgccgccgtcgaggaggcccccgcctcggagcccgtcgtcgccgacgccgccccg
atcgcggacgccgtcccagccgcggacgcgacccccgccgaggcgcccgtcgccgcgacc
cccgccgtcgacgccccggccgagcagcccgcgcgctccggccgcggatcccgccgcgcc
agcaccgcccgcatcgtgcccgagcgcatcgccgagaccgtcgaggcgcccgccgccgag
cccgcgggtaccggcctcgaggcccgcatcgccgaggccacggcaggccgcacgcaggag
cccctcaccgaggcaccccgcaccgaggcgcccgcgcgctccggccgcggatcccgccgg
gccacgagctccggcgtcgtggaccccgcgaccgaggccccgcgccaggccgcgcagcac
gtgaacagcggccagaccgccgaccagctcgtccccgccgacgcgcaggccgacgcgcag
gcgcccgccgtcgacgcgcccaccgaggagcaggcccccgcgcagcgctccggccgcggc
cgtcgccgcggcggacgcgacgcccaggacggcgccgaccgcgccgccgcgcaggacgcg
cccgccccggacaccgcagacgagtcccccgccgcggagcaggccgaccgtcagcgcgac
gaccgcgacggcgacgaccagggcggacgccgcgacgaccagggccgcgagggtcgcgag
ggcggccgcaaccgcagccgcaaccggcgcaaccgcgaccgtggccgcgaccaggacgac
cagcagcagaacggccgcgaccagggccagccgcagcaggccccccgcgagcccgacgcc
gacgacgaggcgcaggaggaggcccgcacgggtcgccagcgccagaacggccgcggccag
ggcgaccgcacgcaggacgtgcgcgccgaccaggcccgcgccgacctcggccgcgacgac
gaccgcggcggccgcagccggtaccgcgaccgcaagcgcggccgcggacagggcggcgac
gacttcgagcccgaggtcaccgaggacgacgtcctgctgcccgtcgcgggcatcctcgac
gtgctcgacaactacgcgttcgtccgcacgagcggctacctgcccggcacgaacgacgtc
tacgtctcgctcggccaggtcaagaagcactcgctgcgcaagggcgacgcgatcgtcggc
gccatccgccagccgcgggagaacgacagccagagccgccagaagtacaacgcgatcgtg
aagatcgactcggtcaacggcctgccgcccgaggaggccgcgaaccgcgtcgagttcggc
aagctcacgccgctgtacccgcaggaccgcctcagcctcgagaccgagcccaacaagctc
acgacgcggatcatcgacctcgtgtcgccgatcggcaagggccagcgcggcctcatcgtc
tcgccgcccaaggccggcaagacgctcgtcctccaggccatcgcgaacgccatcgccacc
aacaaccccgaggtccacctcatggtcgtgctggtcgacgagcgtcccgaggaggtcacc
gacatgcagcgcacggtgaagggcgaggtcatcgcctcgaccttcgaccgtcccgccgag
gaccacaccacggtcgccgagctcgccatcgagcgcgccaagcgcctcgtggagctcggc
cacgacgtggtcgtgctgctcgactccatcacccgcctcggccgcgcgtacaacctcgcg
gcgcccgcgtcgggccggatcctctcgggcggcgtcgactcgtcggcgctctacccgccg
aagcgcttcttcggcgcggcgcgcaacatcgagcacggcggatcgctcacgatcctcgcc
acggcgctcgtggagaccggatccaagatggacgaggtcatcttcgaggagttcaagggc
accggcaacatggagctccgcctctcgcgggccctcgccgacaagcggatcttccccgcg
gtcgacgtcaacgcctccggcacgcgccgcgaggagatgctcatgggcgccgacgaggtc
aaggtcacctggaagctgcgccgcgccctcgccgggctcgagcagcagcaggccctcgag
atcgtcctcagccgcctgaaggagacgacgtccaacgtcgagttcctcatgaaggtccag
gcctccatgcccaacaccggcaacggcgtgtcccaccagagccacgggcacggcgcgcac
gagaagggctga
DBGET
integrated database retrieval system