Clavibacter michiganensis subsp. michiganensis: CMM_1642
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Entry
CMM_1642 CDS
T00529
Symbol
lpdB
Name
(GenBank) Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) component
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
cmi
Clavibacter michiganensis subsp. michiganensis
Pathway
cmi00010
Glycolysis / Gluconeogenesis
cmi00020
Citrate cycle (TCA cycle)
cmi00260
Glycine, serine and threonine metabolism
cmi00280
Valine, leucine and isoleucine degradation
cmi00310
Lysine degradation
cmi00380
Tryptophan metabolism
cmi00620
Pyruvate metabolism
cmi00630
Glyoxylate and dicarboxylate metabolism
cmi00640
Propanoate metabolism
cmi00670
One carbon pool by folate
cmi00785
Lipoic acid metabolism
cmi01100
Metabolic pathways
cmi01110
Biosynthesis of secondary metabolites
cmi01120
Microbial metabolism in diverse environments
cmi01200
Carbon metabolism
cmi01210
2-Oxocarboxylic acid metabolism
cmi01240
Biosynthesis of cofactors
Module
cmi_M00009
Citrate cycle (TCA cycle, Krebs cycle)
cmi_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
cmi_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
cmi_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
cmi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
CMM_1642 (lpdB)
00020 Citrate cycle (TCA cycle)
CMM_1642 (lpdB)
00620 Pyruvate metabolism
CMM_1642 (lpdB)
00630 Glyoxylate and dicarboxylate metabolism
CMM_1642 (lpdB)
00640 Propanoate metabolism
CMM_1642 (lpdB)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
CMM_1642 (lpdB)
00280 Valine, leucine and isoleucine degradation
CMM_1642 (lpdB)
00310 Lysine degradation
CMM_1642 (lpdB)
00380 Tryptophan metabolism
CMM_1642 (lpdB)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
CMM_1642 (lpdB)
00670 One carbon pool by folate
CMM_1642 (lpdB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cmi04147
]
CMM_1642 (lpdB)
Enzymes [BR:
cmi01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
CMM_1642 (lpdB)
Exosome [BR:
cmi04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
CMM_1642 (lpdB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Pyr_redox
Pyr_redox_3
HI0933_like
GIDA
DAO
AlaDh_PNT_C
FAD_oxidored
FAD_binding_2
Amino_oxidase
3HCDH_N
2-Hacid_dh_C
Motif
Other DBs
NCBI-ProteinID:
CAN01694
UniProt:
A5CRI5
LinkDB
All DBs
Position
complement(1856827..1858200)
Genome browser
AA seq
457 aa
AA seq
DB search
MSEQNFDVVVLGGGSGGYAAALRAVQLGKTVGLVEKGKLGGTCLHRGCIPTKALLHSAEV
ADVSRESEKYGVNVTFDGVDIARVNAYREAIVASKYKGLQGLIKARGITVIEGEGRLTSA
TTVQVGDQTVTGKSIVLATGSYSRTLPGLEIGGRVITSEQALELDYIPKKVAILGGGVIG
VEFASVWRSFGVDVQMIEALPHLVPNEEESISKQFERAFRKRGIAFSLGVRFKSVTQDDQ
GVQVALEDGTTYDADLLLVAVGRGPATQGLGFEEAGVKTDRGFVLTDERLQTSVPGVYAV
GDIVPGLQLAHRGFQQGIFVAEEIAGNKPVVVEDINIPKVTYSDPEVASVGYSEAKAAEK
FGADKVSSYEYNLGGNGKSSILGTAGSIKVVRVQDGPVVGIHMIGARVGELIGEGQLIVN
WEAYPEDVANLVHAHPTQNEALGEAHLALAGTPLHAL
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggaacagaactttgacgtggtggtgctcggcggcgggagcggtggctatgcagcc
gccctccgagcggtgcagctgggcaagaccgtgggcctcgtggagaagggcaagctgggc
ggcacgtgcctgcaccgcggctgcatccccacgaaggcgctcctgcactcggccgaggtc
gccgacgtctcgcgggagtcggagaagtacggcgtcaacgtcaccttcgacggggtcgac
atcgcgcgtgtcaacgcgtaccgcgaggcgatcgtcgcgagcaagtacaagggcctccag
gggctcatcaaggcccgtggcatcaccgtcatcgaaggcgagggccgcctgacctccgcc
acgaccgtgcaggtcggcgaccagaccgtcaccgggaagagcatcgtcctcgcgaccggc
tcctactcccggacgctccccggcctcgagatcggcggccgcgtcatcacgagcgagcaa
gcgctcgagctcgactacatcccgaagaaggtcgcgatcctgggcggcggcgtcatcggc
gtcgagttcgcctccgtctggcgctccttcggcgtggacgtgcagatgatcgaggccctc
ccccacctcgtgcccaacgaggaggagtcgatcagcaagcagttcgagcgggcgttccgc
aagcgcggcatcgcgttctcgctcggtgtgcgcttcaagtcggtcacccaggacgaccag
ggggtccaggtcgccctcgaggacggcacgacctacgacgcggacctcctgctcgtcgcc
gtgggccgcggcccggcgacccaggggctcggcttcgaagaggcgggcgtgaagaccgac
cgcggcttcgtcctgacggacgagcggctccagaccagcgtccccggcgtctacgcggtc
ggcgacatcgtccccggcctgcagctcgcgcaccgcggtttccagcagggcatcttcgtc
gccgaggagatcgcgggcaacaagcccgtcgtcgtcgaggacatcaacatccccaaggtc
acctactccgaccccgaggtcgcgagcgtcggctacagcgaggccaaggccgccgagaag
ttcggcgccgacaaggtctccagctacgagtacaacctcggcggcaacggcaagagctcc
atcctcggcacggccggttccatcaaggtcgtccgcgtgcaggatgggcccgtcgtcggc
atccacatgatcggcgcccgtgtcggcgagctcatcggcgagggccagctcatcgtgaac
tgggaggcctaccccgaggacgtcgccaacctggtgcacgcccaccccacccagaacgag
gcgctcggcgaggcgcacctggctctcgccggaacccctctgcacgccctgtag
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