Clavibacter michiganensis subsp. michiganensis: CMM_1646
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Entry
CMM_1646 CDS
T00529
Symbol
sigA
Name
(GenBank) RNA polymerase principal sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
cmi
Clavibacter michiganensis subsp. michiganensis
Pathway
cmi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cmi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CMM_1646 (sigA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmi03021
]
CMM_1646 (sigA)
Transcription machinery [BR:
cmi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CMM_1646 (sigA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
CAN01698
UniProt:
A5CRI9
LinkDB
All DBs
Position
1862537..1864015
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AA seq
492 aa
AA seq
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MATPSTPSATLDAASATGTADDAATGEAKAPAKRAPARKTAAAKAPATKTATAAKAPTKA
AAAKAAAAEAAAAETDSADAPAAPAKAPTARAKAAAAKKAAAASGEAAPAKAPRKTAAKK
TAAQGSGEASDDDADEVVVPVAEDDADDEAVEDGAAKPPVVLEPLPTGAMVLSNKEEDED
VPVYSTTITGATADPVKDYLKQIGKVALLNAAEEVELAMRIEAGLFAEDKLANTPGISRE
LERELRWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFD
YTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTP
EELSRELDMTPEKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDTEAVVPADAVGFTML
QKQLESLLDSLSEREAGVIRMRFGLGDGMPKTLDQIGDTFGVTRERIRQIESKTMAKLRH
PSRSQSLRDYLE
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggccaccccctccaccccgtccgccaccctggacgcggcttccgcgaccggcacggcc
gacgacgccgcgacgggtgaggcgaaggcacccgcgaagcgcgcccccgcccgcaagacc
gcggccgcgaaggcacccgctaccaagaccgcgacggcggcgaaggcccccaccaaggcc
gccgccgcgaaggcggcggcagctgaggcagcagcagccgagaccgactccgccgacgct
cccgcggcccccgccaaggcgcccaccgcgcgggccaaggccgccgccgcgaagaaggcc
gcggccgcgtcgggtgaggccgcaccggcgaaggccccgcgcaagaccgcagcgaagaag
acggcggcccagggctccggagaggcgtccgacgacgatgccgacgaggtcgtggtcccc
gtcgccgaggacgacgcggacgacgaggccgtcgaggacggcgccgccaagccgcccgtc
gtgctcgagccgctcccgaccggcgccatggtgctgtcgaacaaggaggaggacgaggac
gtccccgtctactcgactaccatcaccggtgccacggcggatcccgtcaaggactacctc
aagcagatcggcaaggtcgcgctgctcaacgccgccgaggaggtcgagctcgccatgcgc
atcgaggcgggcctcttcgcggaggacaagctggcgaacacgcccggcatctcccgcgag
ctcgagcgcgagctgcgctgggtcgcacgagacggccagcgcgcgaagagccacctgctg
ggcgcgaacctgcgcctcgtggtgagcctcgcgaagcgctacaccggtcgtggcatgcag
ttcctggacctcatccaggagggcaacctgggcctcatccgcgcggtcgagaagttcgac
tacaccaagggcttcaagttctccacgtacgccacgtggtggatccgccaggccatcacg
cgcgccatggccgaccaggcgcgcaccatccgcatcccggtgcacatggtcgaggtcatc
aacaagctcgcccgcgtccagcgccagatgctgcaggacctgggccgcgagcccacgccc
gaggagctgtcgcgtgagctcgacatgacgcccgagaaggtcatcgaggtccagaagtac
ggccgcgagcccatctcgctgcacacgcccctcggcgaggacggcgacagcgagttcggc
gacctcatcgaggacaccgaggctgtcgtccccgcggacgccgtgggcttcaccatgctg
cagaagcagctggagtcgctgctcgactcgctctcggagcgcgaggccggcgtgatccgc
atgcgcttcggcctcggcgacggcatgccgaagaccctcgaccagatcggcgacacgttc
ggcgtcacgcgcgagcggatccgccagatcgagtcgaagaccatggccaagctccgccac
ccgtcgcgctcgcagtcgctgcgcgactacctcgagtag
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