Clavibacter michiganensis subsp. michiganensis: CMM_1685
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Entry
CMM_1685 CDS
T00529
Name
(GenBank) putative helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
cmi
Clavibacter michiganensis subsp. michiganensis
Brite
KEGG Orthology (KO) [BR:
cmi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmi03019
]
CMM_1685
Enzymes [BR:
cmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CMM_1685
Messenger RNA biogenesis [BR:
cmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CMM_1685
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
AAA_22
DUF6634
nSTAND3
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
CAN01738
UniProt:
A5CRM9
LinkDB
All DBs
Position
complement(1908562..1911033)
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AA seq
823 aa
AA seq
DB search
MTDQLSPAERYAASRTRRSLPLLESFASGLRFDLDPFQRAAAESLENGRSVLVAAPTGAG
KTIVAEFAVYLAMQRPSAKIFYTAPMKALSNQKYAELVAEYGPDEVGLLTGDTNVNSRAR
IVVMTTEVLRNMLYADSDLLRDLAFVIMDEVHYLADRFRGAVWEEVIIHLPQSVRMISLS
ATVSNAEEFGDWLQAVRGETDVIVSEERPVPLEQHVIVRHRMVDLFDSSGLAATHRVNPE
LVRMTHGGGREAVRVRGGQGHSRGRTGAVGGSGKRAPGAWDRGRMDRPEVVALLEERNLL
PAIFFIFSRAGCDAAVKQVLRAGVRLTHAHERDEIRAVVEERCRTLRDEDLAVLGYWEWL
EGLERGVAAHHAGMLPAFKEVVEELFQRKLVKAVFATETLALGINMPARTVVLEQLEKFN
GEARVPLTPGEYTQLTGRAGRRGIDVEGHAVIQWKDGLDPQAVASLASRRTYPLNSSFRP
TYNMAVNLIDQFGRERTREVLESSFAQFQADRAVVDLARKVRTQEESLAGYEKAMVCHLG
DFREYSGLRRELSDLERATAARADMQQPGQHGERDKRQRQLTDLRRRMKAHPCHACKDRE
SHARWAERWWRLKRQTDALGQQIRTRTNAVAKVFDRVTELLLSLGYLKRATDGQVAPTPN
GRMLKRIYGDRDLLIAECLRTQVWVDLDPAALAAMAASLVYQPRRDEGDRNDRNLPRGAF
RAALERTEEIWSRLDDVERERRLPTTDPLSTGLCAPMHRWARGGSLDAVLDEADLAAGDF
VRWTKQTIDLLDQLSVVADGPVSRNARTALDSIRRGIVAYSSV
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
gtgacagaccagctctcgcccgccgaacgctacgcggcctcccgaacgcgtcgcagcctc
ccgctcctcgagtcgttcgcgagcggcctgcgcttcgacctcgatcccttccaacgcgcc
gccgcggagtcgctggagaacgggcgcagcgtcctcgtcgcggcgccgacgggcgcgggg
aagacgatcgtggccgagttcgcggtgtacctcgcgatgcagcggccgagcgccaagatc
ttctacacggcgccgatgaaggcgctcagcaaccagaagtacgccgagctcgtggccgag
tacgggccggacgaggtgggcctgctcacgggcgacaccaacgtcaacagccgcgcgcgc
atcgtcgtgatgacgaccgaggtgctgcgcaacatgctctacgcggactccgacctgctc
cgcgacctcgccttcgtgatcatggacgaggtgcactacctggccgaccgcttccgcggc
gccgtgtgggaggaggtcatcatccacctcccgcagagcgtccggatgatctcgctgagc
gcgaccgtgtccaacgccgaggagttcggcgactggctgcaggcggtgcgcggcgagacg
gacgtcatcgtctccgaggagcggcccgtgccgctcgagcagcacgtcatcgtgcggcac
cgcatggtcgacctcttcgactcgtccggtctcgccgcgacgcaccgcgtgaaccccgag
ctcgtccgcatgacgcacggcggaggtcgcgaggccgtccgcgtgcgcggcggccagggg
cattcccggggccggacgggggcggtcggcggatccggcaagcgggcacccggcgcgtgg
gaccgcggccgcatggaccgccccgaggtcgtcgccctcctcgaggagcgcaacctgctg
cccgcgatcttcttcatcttcagccgcgcgggctgcgacgcggccgtcaagcaggtgctg
cgcgccggcgtccgtctcacccacgcgcacgagcgcgacgagatccgcgccgtcgtggag
gagcgctgccgcacgctccgcgacgaggacctcgccgtcctcggctactgggagtggctc
gagggcctggagcgcggggtcgcggcgcaccacgcgggcatgctgcccgccttcaaggag
gtcgtcgaagagctcttccagcggaagctcgtgaaggccgtgttcgccacggagaccctc
gcgctcggcatcaacatgcccgcgcgcacggtcgtcctcgagcagctcgagaagttcaac
ggcgaggcgcgcgtgccgctcacgccgggggagtacacgcagctgaccggccgcgccggc
cgccgcggcatcgacgtggagggtcacgccgtgatccagtggaaggacgggctggatccg
caggccgtcgcctcgctcgcctcccgccgcacgtaccccctcaactcgagcttccgtccc
acgtacaacatggccgtcaacctcatcgaccagttcggccgggagcgcacgcgcgaggtg
ctcgagtcgtcgttcgcgcagttccaggccgaccgtgcggtcgtcgacctcgcgcggaag
gtgcgcacccaggaggagtcgctcgccgggtacgagaaggcgatggtctgccacctcggc
gacttccgcgagtactcgggcctccgccgcgagctcagcgacctcgagcgcgccaccgcc
gcccgagccgacatgcagcagcccggccagcacggggagcgcgacaagcggcagcgccag
ctgaccgacctccgtcgccggatgaaggcgcacccctgccacgcctgcaaggaccgcgag
tcgcacgcgcgctgggcggagcgctggtggcgcctcaagcggcagacggatgcgctcggg
cagcagatccgcacccgcaccaacgccgtggccaaggtcttcgaccgcgtcaccgagctg
ctgctctcgctcggctacctcaagcgcgccacggacggccaggtcgcgccgacgcccaac
ggccggatgctcaagcgcatctacggcgaccgcgacctcctcatcgcggagtgcctgcgc
acgcaggtgtgggtcgacctcgatcctgcagccctcgccgccatggccgcctcgctggtc
taccagccgcgccgtgacgagggcgaccgcaacgaccgcaacctcccgcgcggcgccttc
cgcgcggcgctcgagcgcacggaggagatctggtcgcgcctcgacgacgtcgagcgcgag
cgccggctgccgacgacggatccgctctcgaccggcctgtgcgccccgatgcaccgctgg
gcgcgcggcggcagcctcgatgccgtgctcgacgaggccgacctcgccgccggcgacttc
gtccgctggacgaagcagaccatcgacctcctggaccagctctccgtcgtggccgacggc
cccgtctcccggaacgcccgcacggcgctcgacagcatccggcgcggcatcgtcgcgtac
tcctcggtgtga
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