Clavibacter michiganensis subsp. michiganensis: CMM_2021
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Entry
CMM_2021 CDS
T00529
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase (ZP_00226410.1| COG0253: Diaminopimelate epimerase [Kineococcus radiotolerans SRS30216]; O69969|DAPF_STRCO Diaminopimelate epimerase (DAP epimerase)). pfam01678, DAP_epimerase,Diaminopimelate epimerase (twice). InterPro: Diaminopimelate epimerase DapF: diaminopimelate epimerase; High confidence in function and specificity
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
cmi
Clavibacter michiganensis subsp. michiganensis
Pathway
cmi00300
Lysine biosynthesis
cmi00470
D-Amino acid metabolism
cmi01100
Metabolic pathways
cmi01110
Biosynthesis of secondary metabolites
cmi01120
Microbial metabolism in diverse environments
cmi01230
Biosynthesis of amino acids
Module
cmi_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
cmi00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
CMM_2021 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
CMM_2021 (dapF)
Enzymes [BR:
cmi01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
CMM_2021 (dapF)
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Ortholog
Paralog
GFIT
Motif
Pfam:
DAP_epimerase
Motif
Other DBs
NCBI-ProteinID:
CAN02084
UniProt:
A5CSL3
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All DBs
Position
complement(2282551..2283429)
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AA seq
292 aa
AA seq
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MADLQFTKGQGTGNDFVLFADPAGEIDLTDTQVQALCDRHFGIGADGTIRAVLSTRIPEG
RAALEEDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFLIENGLIELPPGRTIPIGTRAGV
RDVQRSGSGFQVDLGRWELAGGEPLVRAKDLQVARPGLGIDVGNPHVVVALSSEDELAEA
DLAFVPQLDPEPAAGANVELVVPADPLVVDGVGHITMRVHERGSGETLSCGTGAAAAALA
TRHWAGAAAPHQWRVQLPGGALGVRMFPTEDGEHVGLSGPAELVFDGVVALA
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggcagacctgcagttcaccaagggccagggcacgggcaacgacttcgtgctgttcgcg
gatcccgcgggcgagatcgacctgaccgacacgcaggttcaggccctctgcgaccgccac
ttcggcatcggcgccgacgggacgatccgcgcggtgctctcgacccgcatccccgagggc
cgcgccgccctcgaggaggatccggacgccgagtggttcatggactaccgcaacgtcgac
ggcagccccgccgagatgtgcgggaacggcatccgcgtcttcacgctcttcctcatcgag
aacggcctcatcgagctgcccccggggcgcacgatccccatcggcacccgcgccggtgtc
cgcgacgtgcagcgcagcggatccggcttccaggtcgacctcggccgctgggagctcgcg
gggggcgagccgctcgtgcgcgccaaggacctccaggtcgcgcgtcccggcctcggcatc
gacgtcggcaacccgcacgtggtggtcgcgctgtcgagcgaggacgagctcgcggaggcc
gacctcgcgttcgtgccgcagctggatcccgagcccgccgccggcgcgaacgtcgagctg
gtggtgccggcggatccgctcgtcgtcgacggggtgggccacatcaccatgcgcgtccac
gagcgcgggagcggcgagacgctgagctgcggcaccggggccgcggcggcagccctcgcg
acgcggcactgggcgggtgccgcagcaccgcaccagtggcgcgtccagctgccgggcggt
gcgctcggcgtgcgcatgttcccgaccgaggacggcgagcacgtgggcctctcgggaccg
gccgagctcgtcttcgacggcgtcgtggcgctggcctga
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