Clavibacter michiganensis subsp. michiganensis: CMM_2047
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Entry
CMM_2047 CDS
T00529
Symbol
pnpA
Name
(GenBank) putative polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cmi
Clavibacter michiganensis subsp. michiganensis
Pathway
cmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMM_2047 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmi03019
]
CMM_2047 (pnpA)
03016 Transfer RNA biogenesis [BR:
cmi03016
]
CMM_2047 (pnpA)
Enzymes [BR:
cmi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CMM_2047 (pnpA)
Messenger RNA biogenesis [BR:
cmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CMM_2047 (pnpA)
Transfer RNA biogenesis [BR:
cmi03016
]
Prokaryotic type
tRNA degradation factors
CMM_2047 (pnpA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_KhpA-B
KH_PNO1_2nd
KH_NusA_1st
KH_2
Motif
Other DBs
NCBI-ProteinID:
CAN02110
UniProt:
A5CSN9
LinkDB
All DBs
Position
complement(2310069..2312342)
Genome browser
AA seq
757 aa
AA seq
DB search
MEGPEIKFAEAVLDNGKYGTRTVRFEAGRLAQQAQGAVAAYLDEDTMLLSATSVGKHPKD
NFDFFPLTIDVEERSYAAGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFITGLRNEVQ
VVITVLSIAPDEFYDSLAINAASASSMLSGIPFSGPIAGVRLALIGDQWVVFPKHSQLKE
AVFDITVAGRVVTDSEGNEDVAIMMVEAEATEGAWDLIQGGATKPDEAIVAQGLEAAKPF
IQQLVAAQASLAQQAAKPTVDYPVFLPYAQETYDAVSALALDELGTVYQTADKIERQDAD
DALKTRTKEAVAAKVEAGELPQSALTEFSAAYKSVTKTVVRGRILRDGVRMDGRGLADIR
PLDAEVQVIPRVHGSAIFQRGETQILGVTTLNMLKMEQQIDSLSPITKKRYLHHYNFPPY
STGETGRVGSPKRREIGHGFLAERALVPVLPSREDFPYAIRQVSEALGSNGSTSMGSVCA
STLSLLNAGVPLRAPVAGIAMGLVSDTVDGQVRYAALTDILGAEDALGDMDFKVAGTSEF
VTAIQLDTKLDGIPTSVLDGALKQAKEARTAILGVLNQAIDGPDEMAPTAPRVISVNIPV
DKIGELIGPKGKTINAIQDETGADISIEEDGTVYIGAVDGPSADAARAQVNAIANPTNPE
VGESFLGTVVKIATFGAFVSLLPGKDGLLHISEVRKLAGGKRVENVEDVLGVGQKILVEI
TKIDDRGKLSLAPVLEETADQEGRDAASHGSEAPAEG
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtccagagatcaagttcgccgaggcagtcctcgacaacggcaagtacggaacg
cgcacggtccggttcgaggccggccgcctcgcgcagcaggctcagggcgcggtcgccgcg
tacctcgacgaggacaccatgctgctgtccgccacctcggtgggcaagcacccgaaggac
aacttcgacttcttccccctgaccatcgacgtcgaggagcgcagctacgccgcgggcaag
atccccggctcgttcttccgtcgcgagggccgcccctccaccgaggcgatcctcgtctgc
cgcctcatcgaccggccgctgcgcccgtcgttcatcacgggcctccgcaacgaggtccag
gtcgtcatcaccgtcctcagcatcgcgccggacgagttctacgacagcctcgccatcaac
gcggcgagcgcctcgagcatgctctcgggcatcccgttctccggccccatcgcgggtgtg
cgcctcgcgctcatcggcgaccagtgggtcgtcttccccaagcactcgcagctcaaggag
gccgtcttcgacatcaccgtcgccggccgcgtcgtcaccgactccgagggcaacgaggac
gtcgcgatcatgatggtcgaggccgaggccaccgagggtgcctgggacctcatccagggc
ggcgccacgaagcccgacgaggccatcgtcgcgcagggcctcgaggccgcgaagccgttc
atccagcagctcgtcgccgcgcaggcctcgctcgcgcagcaggccgcgaagcccacggtc
gactaccccgtcttcctgccgtacgcgcaggagacctacgacgccgtcagcgcgctcgcg
ctcgacgagctcggcaccgtgtaccagaccgccgacaagatcgagcgccaggacgcggac
gatgccctcaagacccgcaccaaggaggccgtggccgccaaggtcgaggccggcgagctg
ccgcagtcggcgctcaccgagttctccgcggcctacaagtccgtcacgaagaccgtcgtc
cgcggccggatcctccgcgacggcgtccgcatggacggccgcggcctcgccgacatccgt
ccgctcgacgccgaggtgcaggtcatcccgcgcgtccacggctcggccatcttccagcgc
ggagagacccagatcctgggcgtcaccacgctgaacatgctcaagatggagcagcagatc
gactcgctgagccccatcacgaagaagcgctacctgcaccactacaacttcccgccctac
tccaccggtgagaccggtcgcgtcgggtcgccgaagcgtcgcgagatcgggcacggcttc
ctcgccgagcgcgccctcgtgccggtgctgccgagccgcgaggacttcccctacgcgatc
cgccaggtgtccgaggccctcgggtccaacggctccacgtcgatgggctccgtctgcgcc
tcgaccctgtcgctgctgaacgcgggcgtgccgctgcgcgcgcccgtcgccggcatcgcc
atgggcctcgtgtccgacaccgtcgacggccaggtccgctacgcggccctcaccgacatc
ctcggtgcggaggacgcgctcggcgacatggacttcaaggtcgccggcacgtcggagttc
gtcacggccatccagctggacacgaagctcgacggcatccccacgtcggtcctcgacggt
gcgctcaagcaggcgaaggaggcccgcacggccatcctcggcgtgctgaaccaggccatc
gacggccccgacgagatggccccgaccgcgccccgcgtgatctcggtcaacatccccgtc
gacaagatcggcgagctgatcggcccgaagggcaagacgatcaacgccatccaggacgag
accggcgccgacatctccatcgaggaggacggcaccgtctacatcggcgccgtcgacggc
ccgtcggcggacgccgcgcgtgcgcaggtcaacgccatcgcgaacccgacgaaccccgag
gtcggcgagtccttcctcggcaccgtcgtcaagatcgcgacgttcggcgccttcgtctcg
ctgctccccggcaaggacggcctgctgcacatcagcgaggtccgcaagctcgccggcggc
aagcgcgtcgagaacgtcgaggacgtgctcggggtcggccagaagatcctggtggagatc
accaagatcgacgaccgcggcaagctgtcgctcgctcccgtcctggaggagaccgccgat
caggagggccgcgacgccgccagccacggctccgaggcgcctgcggagggctag
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