Clavibacter michiganensis subsp. michiganensis: CMM_2419
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Entry
CMM_2419 CDS
T00529
Name
(GenBank) putative ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cmi
Clavibacter michiganensis subsp. michiganensis
Brite
KEGG Orthology (KO) [BR:
cmi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmi03019
]
CMM_2419
Enzymes [BR:
cmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CMM_2419
Messenger RNA biogenesis [BR:
cmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CMM_2419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
ResIII
nSTAND3
AAA_30
HA2_N
T2SSE
SLFN-g3_helicase
NACHT
AAA_23
Rv2632c-like
UvrD-helicase
Zeta_toxin
DUF3420
AAA_16
FtsK_SpoIIIE
PhoH
Motif
Other DBs
NCBI-ProteinID:
CAN02498
UniProt:
A5CTR6
LinkDB
All DBs
Position
2722590..2726408
Genome browser
AA seq
1272 aa
AA seq
DB search
MEFSIAYPPELPVSRMRDEIADAIRDNQVVIVAGATGSGKTTQLPKICLELGRESIGHTQ
PRRLAARTISERIAEELGGEVGQLVGYQVRFTDKVSADTRIKLMTDGILLNELQRDRLLR
KYDTIIIDEAHERSLNIDFLLGYLKQLLPRRSDLKLIITSATIDPQSFSKHFGDAPIVEV
SGRTYPVEIRYRPLVAEAAVAGEDDDLADAPLERPADDRDFLEGINAALDELAAESSGDV
LVFLSGENEIRDAEDAIRNRNLPHTEVLPLYGRLSSADQHRVFQPSTQAGVRRRIVLATN
VAETSLTVPGIKYVIDAGTARISRYSVRSKVQRLPIEAISQASANQRSGRSGRTSDGIAI
RLYSEEDFARRPEFTEPEILRTNLAAVILQMVSLGLGDIAAFPFLQPPDSRGIKDGVDLL
TELGAVVRSPDGTPALTKVGRDLSRLPIDPRFARMVVESRKHGVSREVMIIVAGLTIQDV
RERPLEKRPQADQQHARFVDPASDFITLLNLWNHLEEKEAELSSSAFRRMCKAEFLNYVR
VREWKDVFRQLRQLARPLDLQMNEPKADPDGIHRSLLAGLLSHIGLKDAQKKDYVGARQS
RFVVFPGSALAKKQPDAIMSAELVETSRLFARTNAAIDPAWAEPIAGGLVKRTHSEPHWE
KKQGATVAWERVTLYGVPIVLKRRVQFSRIDPAYARELFIRHALVEGDWESQQAFDRANR
KLREELAEVEERTRRRDILNDDEAVFDFYDKRIPRDVASTRAFEGWWKKQRQETPELLTM
TAEELLAEDAVDVDEAAFPPTWQQGDQRLSLTYRFEPGAPDDGVTVQVPLALLARLSPAG
FDWQVPGMRRDLVTAMIKALPKALRKNVVPAADWADRLLEGLPEPDPQHPVAFTTTIAGL
IMRKAHVRVADDDFDLDRIPAHLRMAFRVVDERGREVAAGRDLTELQARLSSRARDSVAR
ATARPVERVAGASGGAPRGMERTGLTTWDLDELPRFVDTAQGGTGDSRHVIRAYPALVDE
GSTVAIRLMATAEDQARAMPGGVRRLLVLAIANPSAYVKQHLTSQEKLMLATSPYPNVQA
LFDDCLLAAIDQVLERVAPGGAIYSKELFETARDRVSGVVMDSMFDTVALVNRILTGARD
AERAIKQATSMQLIGALTDAREQLAGLVHPGFVSATGLARLQRLPAYLSGLTHRVQRLPD
QPARDRAWMTEVLKATDLYREAGGVIPSAPHAPESLAHARWMLEELRLSLFAQHLPTAEP
VSLQRIRKVLAG
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggaattcagcatcgcgtacccgcccgagctccccgtcagccggatgcgcgacgagatc
gccgacgccatccgcgacaaccaggtcgtcatcgtcgcgggcgcgaccggatccggcaag
accacgcagctgccgaagatctgcctcgagctcggccgcgagagcatcgggcacacgcag
ccccgccggctcgccgcgcgcaccatctcggagcgcatcgcggaggagctcggcggcgag
gtcggccagctcgtcggctaccaggtgcgcttcaccgacaaggtctcggccgacacccgc
atcaagctcatgaccgacgggatcctgctcaacgagctgcagcgcgaccggctgctccgc
aagtacgacacgatcatcatcgacgaggcccacgagcgcagcctcaacatcgacttcctg
ctcggctacctcaagcagctgctgccgcgccggtccgacctcaagctcatcatcacgtcg
gccaccatcgacccgcagagcttctcgaagcacttcggcgacgcccccatcgtcgaggtg
tccgggcgcacgtaccccgtggagatccgctaccgcccgctcgtcgccgaggccgccgtc
gcgggcgaggacgacgacctcgccgacgcgccgctggagcgcccggccgacgatcgcgac
ttcctcgaggggatcaacgccgcgctcgacgagctggcggccgagtcctcgggcgacgtg
ctcgtgttcctcagcggcgagaacgagatccgcgacgccgaggacgcgatccggaaccgg
aacctcccgcacaccgaggtgctgccgctctacggccggctctcgtccgccgaccagcac
cgcgtcttccagccgtcgacgcaggcgggcgtgcgccgccgcatcgtgctcgccaccaac
gtcgccgagacgagcctcacggtgcccggcatcaagtacgtgatcgacgccggcaccgcc
cgcatctcgcgctactccgtgcgctccaaggtgcagcgcctccccatcgaggcgatctcg
caggcgtcggcgaaccagcgctcgggccgctccggccgcacgagcgacggcatcgcgatc
cgcctgtactccgaggaggacttcgcccgccggcccgagttcaccgagccggagatcctg
cgcacgaacctcgcggccgtgatcctgcagatggtgtcgctcggcctcggcgacatcgcc
gcgttcccgttcctgcagccgccggactcgcgcggcatcaaggacggcgtcgacctgctc
accgagctgggcgcggtcgtccgctcccccgacggcacgcccgccctcaccaaggtgggc
cgcgacctgtcgcggctgccgatcgacccgcggttcgcacgcatggtcgtcgagtcgcgc
aagcacggcgtgagccgcgaggtcatgatcatcgtggccggcctcaccatccaggacgtg
cgcgagcggcccctcgagaagcgcccgcaggccgaccagcagcacgcgcggttcgtggat
cccgcgagcgacttcatcaccctcctcaacctctggaaccacctggaggagaaggaggcc
gagctctcctcgagcgcgttccgccgcatgtgcaaggccgagttcctcaactacgtgcgc
gtgcgcgagtggaaggacgtcttccggcagctgcggcagctcgcgcgcccgctcgacctg
cagatgaacgagcccaaggccgacccggacgggatccacaggtcgctgctcgcgggcctc
ctctcccacatcgggttgaaggacgcgcagaagaaggactacgtgggcgcgcgccagtcc
cggttcgtggtgttccccggatccgcgctcgcgaagaagcagcccgacgcgatcatgagc
gccgagctcgtcgagaccagccgcctgttcgcgcgcaccaacgcggccatcgacccggcg
tgggccgagcccatcgcgggcgggctcgtcaagcgcacccacagcgagccgcactgggag
aagaagcagggcgcgaccgtggcatgggagcgcgtgacgctgtacggcgtccccatcgtg
ctcaagcgccgcgtgcagttctcgcgcatcgaccccgcgtacgcgcgcgagctcttcatc
cggcacgcgctcgtcgagggagactgggagtcgcagcaggcgttcgaccgcgccaaccgg
aagctccgcgaggagctcgccgaggtcgaggagcgcacgcgccgccgcgacatcctcaac
gacgacgaggccgtcttcgatttctacgacaagcggatcccgcgcgacgtcgcctccacg
cgcgccttcgaggggtggtggaagaagcagcgccaggagacgcccgagctcctcaccatg
accgccgaggagctcctcgcggaggacgcggtggacgtcgacgaggccgcgttcccgccc
acctggcagcagggcgaccagcgcctctccctcacctaccgcttcgagccgggcgcgccc
gacgacggcgtgaccgtgcaggtgccgctcgcgctgctcgcgcggctcagccccgccggc
ttcgactggcaggtgcccggcatgcggcgggatctcgtcaccgccatgatcaaggccctc
ccgaaggcgctgcgcaagaacgtggtgcccgccgccgactgggccgaccggctcctcgag
gggctgcccgagccggatccgcagcacccggtcgcgttcacgaccacgatcgcgggcctc
atcatgcgcaaggcgcacgtgcgcgtcgccgacgacgacttcgacctcgaccggatcccc
gcccacctccgcatggcgttccgcgtggtcgacgagcgcggccgcgaggtcgccgccggc
cgcgacctcaccgagctgcaggcgcgcctgtccagccgcgcccgcgacagcgtcgcccgg
gccaccgcgcggcccgtcgagcgcgtcgccggcgcatcaggcggcgcgccccgcggcatg
gagcgcacgggcctcaccacgtgggacctcgacgagctgccgcgcttcgtcgacaccgcg
cagggcggcacgggcgacagccggcacgtcatccgcgcctacccggcgctcgtcgacgag
ggatccaccgtcgcgatccgcctcatggccaccgccgaggaccaggcccgcgccatgccc
ggcggcgtgcggcgcctgctcgtgctcgccatcgcgaacccctcggcatacgtgaagcag
cacctcacgagccaggagaagctcatgctcgcgacgagcccgtacccgaacgtgcaggcg
ctcttcgacgactgcctgctggccgcgatcgaccaggtgctcgagcgcgtggcccccggc
ggcgcgatctactccaaggagctgttcgagaccgcgcgcgaccgcgtctccggcgtcgtc
atggactcgatgttcgacacggtggcgctcgtgaaccggatcctcaccggcgcgcgcgac
gccgagcgcgcgatcaagcaggccacgagcatgcagctgatcggcgcgctcaccgacgcg
cgcgagcagctcgccggactcgtacacccgggcttcgtctcggccaccgggctcgcgcgg
ctgcagcgtctgcccgcctacctgtccggactcacccaccgtgtgcagcgcctgcccgac
cagcccgcgcgcgaccgcgcgtggatgaccgaggtgctgaaggccaccgacctctaccgc
gaggccggcggcgtcatcccgtccgcgccgcacgcgcccgagtcgctcgcgcacgcccgc
tggatgctcgaggagctgcgcctcagcctcttcgcccagcacctgccgacggccgagccg
gtgtcgctgcagcggatccgcaaggtgctcgcgggctga
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