Clavibacter michiganensis subsp. michiganensis: CMM_2474
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Entry
CMM_2474 CDS
T00529
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
cmi
Clavibacter michiganensis subsp. michiganensis
Pathway
cmi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CMM_2474
09124 Replication and repair
03420 Nucleotide excision repair
CMM_2474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmi03021
]
CMM_2474
03400 DNA repair and recombination proteins [BR:
cmi03400
]
CMM_2474
Enzymes [BR:
cmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CMM_2474
Transcription machinery [BR:
cmi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CMM_2474
DNA repair and recombination proteins [BR:
cmi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CMM_2474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
Motif
Other DBs
NCBI-ProteinID:
CAN02555
UniProt:
A5CTW9
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All DBs
Position
2789099..2790763
Genome browser
AA seq
554 aa
AA seq
DB search
MSAPRLAGMPDGPLIVQSDRTVLLEVAHADAEDARHDLAVFAELERAPEHIHTYRITRLG
LWNARAAGHTAEDMLATLERYSRFPVPQSVTVDVTDTVGRYGRLVIGRDSDGELQISSTE
SAVLSEVASSRRIAPLLTERVDATTYRVQAWARGQLKQELVKIGWPAEDLAGYTPGTPHD
MALVEDGWTLRGYQTDAVDHFLDGGSGVVVLPCGAGKTLVGAAAMARAKTTTLILVTNTV
SARQWRSELLKRTTLTEDEIGEYSGQSREVKPVTIATYQILTAKRKGEYAHLSLLDALDW
GLVVYDEVHLLPAPVFKLTADLQARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKEI
EAQGFISPAECFEVRIDLPDEDRLVYAAAADDERYRLAATAPAKLDVTRALVERHRGESI
LVIGQYLEQIDELAEALGAPKLTGATPVAERERLYQAFRDGTERVLVVSKVANFSVDLPD
ATVAIQVSGSFGSRQEEAQRLGRLLRPEASGMSASFYTLVSRDTVDQDFAQNRQRFLAEQ
GYSYTILDAAGIAA
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgcctaggctggcgggcatgcccgacggccccctcatcgtccagagcgaccgc
accgtcctcctcgaggtggcccacgccgacgccgaggacgcccggcacgacctcgccgtg
ttcgccgagctggagcgcgcgcccgagcacatccacacgtaccggatcacccgcctcggc
ctctggaacgcccgtgccgccggccacacggccgaggacatgctcgcgaccctcgagcgc
tactcccggttccccgtgccgcagtcggtcacggtggacgtgaccgacacggtcggccgc
tacggccgcctcgtcatcgggcgcgactcggacggagagctgcagatctcgagcacggag
tccgccgtcctctcggaggtcgcgagctcccgccgcatcgcgccgctgctcacggagcgc
gtggacgcgacgacctaccgcgtgcaggcgtgggcgcgcgggcagctcaagcaggagctc
gtgaagatcggctggcccgccgaggacctcgccggctacacgcccggcacgccccacgac
atggcgctcgtggaggacggctggacgctgcgcggctaccagaccgacgcggtcgaccac
ttcctcgacggcggatccggcgtggtcgtcctcccctgcggcgccgggaagacgctcgtc
ggcgccgccgccatggcccgcgccaagaccaccacgctgatcctcgtcacgaacaccgtg
tcggcccgccagtggcgctcggaactgctgaagcgcaccactctcaccgaggacgagatc
ggcgagtactcgggccagtcgcgcgaggtcaagcccgtgaccatcgcgacgtaccagatc
ctcaccgccaagaggaagggcgagtacgcgcacctctcgctcctcgacgcgctcgactgg
ggcctcgtcgtctacgacgaggtgcacctcctgcccgcgcccgtcttcaagctgaccgcg
gatctccaggcccgccgccgcctcggcctcacggccacgctcgtgcgcgaggacggccgc
gagggcgacgtcttcagcctcatcggcccgaagcggttcgacgcgccgtggaaggagatc
gaggcccagggcttcatctcccccgccgagtgcttcgaggtgcgcatcgacctgcccgac
gaggaccggctcgtctacgccgccgcggccgacgacgagcgctaccggctcgccgccacc
gcgcccgccaagctcgacgtgacgcgcgcgctggtcgagcggcaccgcggcgagagcatc
ctcgtcatcggccagtacctggagcagatcgacgagctcgcagaggccctcggtgctccg
aagctcacgggcgcgacccccgtcgccgagcgcgagcggctctaccaggcgttccgcgac
ggcacggagcgggtgctcgtggtcagcaaggtcgccaacttctcggtggacctgcccgac
gccaccgtcgcgatccaggtgtccggctcgttcggatcccgccaggaggaggcgcaacgc
ctcggccgcctgctccgcccggaggcatcaggcatgtccgcgagcttctacacgctcgtc
tcccgcgacaccgtcgaccaggacttcgcccagaaccgccagcgcttcctggccgagcag
ggctacagctacacgatcctggatgcggcgggcatcgcggcctga
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