Clavibacter michiganensis subsp. michiganensis: CMM_2619
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Entry
CMM_2619 CDS
T00529
Name
(GenBank) putative topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cmi
Clavibacter michiganensis subsp. michiganensis
Brite
KEGG Orthology (KO) [BR:
cmi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmi03032
]
CMM_2619
03400 DNA repair and recombination proteins [BR:
cmi03400
]
CMM_2619
Enzymes [BR:
cmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CMM_2619
DNA replication proteins [BR:
cmi03032
]
Prokaryotic type
DNA Topoisomerases
CMM_2619
DNA repair and recombination proteins [BR:
cmi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CMM_2619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF4982
Motif
Other DBs
NCBI-ProteinID:
CAN02702
UniProt:
A5CUB5
LinkDB
All DBs
Position
complement(2943609..2944577)
Genome browser
AA seq
322 aa
AA seq
DB search
MVRLRRSDATGKGYTRRRSGKGWTYLDSDGNRVTDKVLRARMDHLGIPPAWTDVWIAPYE
NGHVQATGMDSAGRRQYIYHPTWREQKDRIKFDRSLQLAESLPAARRQVTMHLRQDGFTR
ERALAAGFRMLDTGSLRVGSERYTESNGSHGLSTLLCSHVTVHGDSVHLEFPAKSGQEWS
SDIRDHDLVQVVGGLQERGPNARLLAYEEGGEWHPLGAADINDYVRERTGGEFTAKDFRT
LHGTVAAAISLAKHGPEATKGKRQRALAQAYRDAAEVLSNTPTIAKNSYVDPRLVDEYVH
GRTIDPQRLASGETELRNLLFR
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atggtcagactccggcgcagcgacgccaccggcaagggctacacgcgcaggcgctcgggc
aagggctggacctacctcgactccgacgggaaccgcgtcaccgacaaggtgctccgcgcg
cgcatggaccacctcggcatcccgccggcctggaccgacgtctggatcgcgccctacgag
aacgggcacgtgcaggccacgggcatggacagcgccggccgccggcagtacatctaccac
ccgacctggcgcgagcagaaggaccggatcaagttcgaccgctcgctgcagctcgccgag
tcgctccccgccgcgcgacgccaggtcaccatgcacctccgccaggacggcttcacgcgc
gagcgcgcgctggccgccggcttccggatgctcgacacgggcagcctccgcgtcggcagc
gagcgctacacggagtcgaacggcagccacggcctgtcgacgctgctgtgctcgcacgtc
accgtgcacggggactccgtgcacctcgagttcccggcgaagagcggccaggagtggtcg
agcgacatccgcgaccacgacctcgtgcaggtcgtcgggggcctgcaggaacgcggtccg
aacgcgcggctgctggcctacgaggaaggtggcgagtggcacccgctcggcgcggccgac
atcaacgactacgtgcgcgagcgcacgggcggcgagttcaccgccaaggacttccggacg
ctgcacggcacggtggcggcggcgatcagcctggcgaagcacggccccgaggcgacgaag
ggcaagcggcagcgggcgctcgcgcaggcgtaccgcgacgccgccgaggtgctcagcaac
accccgaccatcgcgaagaacagctacgtggacccacggctcgtcgacgagtacgtgcac
ggccgcacgatcgacccgcagcgcctcgcgtcgggggagacggagctccggaacctgctg
ttccgatga
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integrated database retrieval system
