Clavibacter michiganensis subsp. michiganensis: CMM_2630
Help
Entry
CMM_2630 CDS
T00529
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cmi
Clavibacter michiganensis subsp. michiganensis
Pathway
cmi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cmi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CMM_2630 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmi03021
]
CMM_2630 (rpoC)
03400 DNA repair and recombination proteins [BR:
cmi03400
]
CMM_2630 (rpoC)
Enzymes [BR:
cmi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CMM_2630 (rpoC)
Transcription machinery [BR:
cmi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CMM_2630 (rpoC)
DNA repair and recombination proteins [BR:
cmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CMM_2630 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CAN02713
UniProt:
A5CUC6
LinkDB
All DBs
Position
complement(2954078..2957977)
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVTTFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSAVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEDARHEDMPGLENELRLEIKTLQDQRDSQIAERLGRLETD
LAALEAEGAKSDQKRRAKDGAEKEMGQTRKAFDEDISRLERVWEEFRSLKVGELKPEDAV
FHELQDRFGIYFEAHMGAEAIQKRLEAFDLEAEGELLREQIATGKGQKKIRAIKRLRVVS
SFLATGNSPAAMVLQVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
GQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTLKEGVAGEGR
AFSSVAEAILAKDQLSLDLNAKVRIRLHDIYFGEGEAPEGVELDEKGKTVGPVLLETTLG
RALFNETLPVDYPYIEAVADKGKLSEIVNDLAERYPKVEVAAALDRIKDAGFYWATRSGV
TVALSDVLTPPTKAAILSGYEKQAAKVQGQFEKGLTTNAERRQELIEIWNKATAEVAKAM
EDNLPADNNINRMVSSGARGNWMQVRQIAGMRGLVSNPKGEIIPRPIVHSYREGLTVAEY
FISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTGRGLDLPIATKGADGS
SVRDSNVENSVYARSLAADAVNEAGEVVAPAGSDVGDVMIDHLIAAGVHEIKVRSVLTCE
SAVGVCAACYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQG
LPRVQELFEARTPKGASPIAEAAGRITIEDTDRSRKVILTPDNGDEPHIYPVLKRATLLV
EDGQHVELGQQLHVGAIDPKEVLRVKGVREVQKHLVGGVQGVYRSQGVPIHDKHIEVIVR
QMLRKVTVVEHGDTDLLPGELVDRARYNEVNRATLTEGKKTASARQEVMGITKASLATES
WLSAASFQETTRVLTQAAMEGKSDPLMGLKENVIIGKLIPAGTGLAKYRDVTVTATEEAK
AERYPNRIFTDESVFNESDLSFVDFDSFSSDDYTPGTYN
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtaacaactttcgatgagctgcggatcggcctggccacggccgacgacatc
cgccgctggtcgcacggtgaggtcaagaagcccgagaccatcaactaccgcacgctgaag
cccgagaaggacggcctcttcggagagcagatcttcggacccagccgcgactgggagtgc
tcctgcggcaagtacaagcgggtgcgcttcaagggcatcgtctgcgagcgctgcggcgtg
gaggtcaccaagtccgcggtccgccgcgagcgcatgggccacatcgagctcgccgcgccc
gtcacgcacatctggtacttcaagggcgtcccgtcgcgcctcggctacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatggtgatcagcgtggac
gaggatgctcgccacgaggacatgcctggcctcgagaacgagctccggctcgagatcaag
accctgcaggaccagcgcgacagccagatcgccgagcgcctcgggcgcctggagaccgac
ctggccgcgctggaggccgagggcgccaagagcgaccagaagcgccgcgcgaaggacggc
gccgagaaggagatgggtcagacgcgcaaggcgttcgacgaggacatctcccgtctcgag
cgcgtctgggaggagttccgcagcctcaaggtcggcgagctcaagcccgaggacgccgtc
ttccacgagctgcaggaccgcttcggcatctacttcgaggcccacatgggcgccgaggcg
atccagaagcgcctggaggccttcgacctcgaggccgagggggagctgctccgcgagcag
atcgccaccggcaagggccagaagaagatccgcgccatcaagcgcctgcgcgtcgtcagc
tccttcctcgcgaccggcaactcgccggccgcgatggtgctgcaggtcgtcccggtcatc
ccgccggagctgcgcccgatggtgcagctcgacggcggccgcttcgcgaccagcgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctccgtcgtctgctggatctc
ggcgctcccgagatcatcgtcaacaacgagaagcgcatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgtcccgtcacgggcaccggcaaccgcgcgctcaag
tccctcagcgacatgctgaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtggactactcgggccgctcggtcatcatcgtcgggccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggcgctcgagctgttcaagccgttcgtcatcaagcgcctg
atcgacctgagccacgcccagaacatcaaggccgccaagcgcatggtcgagcgcagccgc
ggacaggtctgggacgtgctcgaggagatcatccgcgagcgccccgtgctgctcaaccgc
gcgcccacgctccaccgcctgggcatccaggcgttcgagccccagctcgtggagggcaag
gcgatccagctgcacccgctcgtctgcgccgcgttcaacgcggacttcgacggcgaccag
atggccgtccacctgcccctgtcggtcgaggcccaggccgaggcgcgcatcctgatgctc
gcctcgaacaacatcctcaagccgtcggacggacgcccggtcaccctgcccacgcaggac
atgatcatcggcctgcaccacctgaccaccctcaaggagggcgtcgccggtgagggtcgc
gcgttcagctcggtggccgaggccatcctggcgaaggaccagctctcgctggacctcaac
gccaaggtgcgcatccgcctgcacgacatctacttcggcgagggcgaggcgcccgagggc
gtcgagctcgacgagaagggcaagaccgtcggccccgtgctgctcgagaccaccctcggt
cgcgcgctgttcaacgagaccctgccggtcgactacccctacatcgaggccgtcgccgac
aagggcaagctctccgagatcgtcaacgacctcgccgagcggtacccgaaggtggaggtc
gcggcagcgctcgaccggatcaaggacgcgggcttctactgggccacgcgctccggcgtc
acggtcgccctctccgacgtgctgaccccgcccaccaaggcggccatcctgtcgggctac
gagaagcaggccgccaaggtccagggccagttcgagaagggactcacgacgaacgccgag
cgtcgtcaggagctcatcgagatctggaacaaggccaccgccgaggtcgcgaaggcgatg
gaggacaacctccccgccgacaacaacatcaaccgcatggtgtcctccggggcacgaggc
aactggatgcaggtccgccagatcgccggtatgcgcggcctcgtgtcgaacccgaagggc
gagatcatcccccgcccgatcgtccactcgtaccgcgagggcctgacggtggcggagtac
ttcatctccacccacggtgcccgcaagggactggccgacaccgcgctgcgcaccgccgac
tccgggtacctcacccgtcgtctggtggacgtgtcgcaggacgtcatcatccgcgaggac
gactgcggcaccggccgcggtctcgacctgccgatcgccacgaagggcgctgacggctcg
tccgtccgcgactccaacgtggagaactcggtgtacgcccgctcgctggccgccgacgcg
gtcaacgaggcaggcgaggtcgtcgcccccgcgggcagcgacgtcggcgacgtcatgatc
gaccacctgatcgctgccggcgtgcacgagatcaaggtgcgctcggtcctcacgtgcgag
tccgccgtcggcgtgtgcgcggcctgctacggccgctcgctcgccaccggcaagctcgtc
gacatcggcgaggccgtcggcatcatcgcggcccagtcgatcggcgagcccggcacgcag
ctcacgatgcgcaccttccacaccggtggtgtggcatcggcggacgacatcacgcagggt
ctgccccgcgtgcaggagctcttcgaggcccgcacccccaagggtgcgtcgcccatcgcg
gaggccgccggtcgcatcacgatcgaggacacggatcgcagccgcaaggtgatcctgacc
ccggacaacggcgacgagccgcacatctacccggtgctcaagcgcgcgaccctcctcgtc
gaggacggccagcacgtcgagctcgggcagcagctgcacgtcggcgccatcgacccgaag
gaggtcctccgggtcaagggcgtgcgcgaggtgcagaagcacctcgtgggcggtgtccag
ggcgtctaccgctcgcagggcgtcccgatccacgacaagcacatcgaggtcatcgtgcgg
cagatgctgcgcaaggtcacggtcgtcgagcacggcgacacggacctcctccccggtgag
ctggtcgaccgggcccgctacaacgaggtcaaccgcgccacgctgacggagggcaagaag
accgcctccgcccgccaggaggtcatgggaatcaccaaggcctcgctcgcgaccgagtcg
tggctgtcggccgcgtccttccaggagacgacccgcgtgctcacgcaggccgccatggag
ggcaagtccgacccgctgatgggcctcaaggagaacgtcatcatcggcaagctgatcccg
gccgggacggggctcgcgaagtaccgcgacgtcaccgtcaccgcgacggaggaggccaag
gcagagcgctacccgaaccgcatcttcacggatgagtcggtgttcaacgagtccgacctg
agcttcgtcgacttcgacagcttcagctcggacgactacacgcccggcacctacaactag
DBGET
integrated database retrieval system
